Locus 6133

Sequence ID	X_DroMel_CAF1
Location	15,699,918 – 15,700,031
Length	113
Max. P	0.678875

overview

Window 4

Location	15,699,918 – 15,700,031
Length	113
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	99.56
Mean single sequence MFE	-26.75
Consensus MFE	-25.35
Energy contribution	-25.35
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-2.07
Structure conservation index	0.95
SVM decision value	0.30
SVM RNA-class probability	0.678875
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15699918 113 + 22224390
UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU-UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU
..........((((((((((((((....)))))))).................((.((-((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -26.40)
>DroSec_CAF1 10967 113 + 1
UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU-UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU
..........((((((((((((((....)))))))).................((.((-((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -26.40)
>DroEre_CAF1 10645 113 + 1
UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU-UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU
..........((((((((((((((....)))))))).................((.((-((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -26.40)
>DroYak_CAF1 10768 114 + 1
UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUUUUGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU
..........((((((((((((((....)))))))).................((.(.(((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -27.80)
>consensus
UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU_UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU
..........((((((((((((((....)))))))).................((.(..((((.((((((.(((((....)))))....)))))).))))..).)).)))))). (-25.35 = -25.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:07 2006