Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,699,505 – 15,699,602 |
Length | 97 |
Max. P | 0.928475 |
Location | 15,699,505 – 15,699,602 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.89 |
Mean single sequence MFE | -18.74 |
Consensus MFE | -14.91 |
Energy contribution | -14.03 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.20 |
Mean z-score | -1.87 |
Structure conservation index | 0.80 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15699505 97 + 22224390 CCGUGCAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUAUGUAUGUAUAUGCCACGCGAUCAUAUAUAUGCGCACAUAUAUGCGCGUAAUUUGAUU .((((............((((((((((((((......))))).))))))))).)))).(((((.((.((((((((......)))))))))).))))) ( -24.02) >DroEre_CAF1 10256 84 + 1 CCGUGUAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUACGAGUAUAUAUGCCACGCGAUCAUAUAUAUGCGCAUAUAUGU-------------AU .(((((..........(((((.....))))).((((((((....))))))))..)))))...((((((((....))))))))-------------.. ( -16.10) >DroYak_CAF1 10375 84 + 1 CCGUGUAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUACGAGUAUAUAUGCCACGCGAUCAUAUAUAUGCGCAUAUAUGU-------------AU .(((((..........(((((.....))))).((((((((....))))))))..)))))...((((((((....))))))))-------------.. ( -16.10) >consensus CCGUGUAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUACGAGUAUAUAUGCCACGCGAUCAUAUAUAUGCGCAUAUAUGU_____________AU ..((((...........((((((..(.......)..)))))).(((((((((.........)))))))))))))....................... (-14.91 = -14.03 + -0.88)
Location | 15,699,505 – 15,699,602 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 84.89 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -15.21 |
Energy contribution | -15.43 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -2.51 |
Structure conservation index | 0.81 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15699505 97 - 22224390 AAUCAAAUUACGCGCAUAUAUGUGCGCAUAUAUAUGAUCGCGUGGCAUAUACAUACAUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUGCACGG .....((((((((((((....))))))(((((((((.....(((.......))).)))))))))...............))))))............ ( -20.10) >DroEre_CAF1 10256 84 - 1 AU-------------ACAUAUAUGCGCAUAUAUAUGAUCGCGUGGCAUAUAUACUCGUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUACACGG ..-------------..(((((((((..((((((((.((....))))))))))..)))))))))........(((....((((......))))))). ( -18.00) >DroYak_CAF1 10375 84 - 1 AU-------------ACAUAUAUGCGCAUAUAUAUGAUCGCGUGGCAUAUAUACUCGUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUACACGG ..-------------..(((((((((..((((((((.((....))))))))))..)))))))))........(((....((((......))))))). ( -18.00) >consensus AU_____________ACAUAUAUGCGCAUAUAUAUGAUCGCGUGGCAUAUAUACUCGUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUACACGG .................(((((((((..((((((((.((....))))))))))..)))))))))........(((....((((......))))))). (-15.21 = -15.43 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:06 2006