Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,696,876 – 15,696,986 |
Length | 110 |
Max. P | 0.686907 |
Location | 15,696,876 – 15,696,986 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.18 |
Mean single sequence MFE | -24.88 |
Consensus MFE | -21.94 |
Energy contribution | -23.38 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.79 |
Structure conservation index | 0.88 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15696876 110 - 22224390 CAUUUAAUAUUUACCACAGAGACGGUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGACACC ................(((.((((((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))))))...)))..... ( -28.10) >DroSec_CAF1 7884 110 - 1 CAUUUAAUAUUUACCACAGAGGCGGUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGACACC ................(((.((((((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))))))...)))..... ( -27.60) >DroEre_CAF1 7835 105 - 1 CAUUUAAUAUUAACCACAGAG---GUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGA--CC ................(((.(---((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))).)))......--.. ( -21.90) >DroYak_CAF1 7860 105 - 1 CAUUUAAUAUUAACCACAGAG---GUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGA--CC ................(((.(---((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))).)))......--.. ( -21.90) >consensus CAUUUAAUAUUAACCACAGAG___GUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGA__CC ................(((.((((((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))))))...)))..... (-21.94 = -23.38 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:05 2006