Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,688,174 – 1,688,282 |
Length | 108 |
Max. P | 0.999594 |
Location | 1,688,174 – 1,688,282 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.20 |
Mean single sequence MFE | -42.26 |
Consensus MFE | -39.32 |
Energy contribution | -39.08 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.30 |
Structure conservation index | 0.93 |
SVM decision value | 3.76 |
SVM RNA-class probability | 0.999594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1688174 108 - 22224390 GCUUAGUCAGCGAUCCGCUU-UUGAUUGUUAGUCAGGUGGA--A----ACAUACACCUGGCAUUCGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG ....(((((((((((.....-..))))))).((((((((..--.----.....))))))))......))))...(((((((..(((((((....)))))))..)))))))..... ( -44.10) >DroSec_CAF1 28379 108 - 1 GCUUAGUCAGCGAGCCGUUU-UUGAUGUUGAGUCAGGUGGA--A----ACACACACCUGGCAUUUGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCA ......((((((...((...-.)).))))))((((((((..--.----.....)))))))).....(((.....(((((((..(((((((....)))))))..))))))).))). ( -40.40) >DroSim_CAF1 22453 108 - 1 GCUUAGUCAGCGAGCCGUUU-UUGAUUGUGAGUCAGGUGGA--A----ACACACACCUGGCAUUUGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG ....((((.((((..((...-.)).))))..((((((((..--.----.....))))))))......))))...(((((((..(((((((....)))))))..)))))))..... ( -40.60) >DroEre_CAF1 24127 110 - 1 GCUUAGUCAGCGAGCCGCUU-UUGAUUAUGAGUCAGGUGGGGUA----AAACACACCUGGCGUUCGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG ....((((..(((((..(..-..).......((((((((.(...----...).))))))))))))).))))...(((((((..(((((((....)))))))..)))))))..... ( -43.40) >DroYak_CAF1 22100 115 - 1 GCUUAGUCAGCGAGCCGCUUUUUGAUUAUGAGUCAGGUGGUGUAGGUUAGCCACACCUGGCAUUCGGGACUUACUUUUGCACUUGGCCAGGCCGCUGGCCACCUGCAGGAAUCCG ....((((..((((((....((((((.....)))))).(((((.((....))))))).)))..))).))))...(((((((..(((((((....)))))))..)))))))..... ( -42.80) >consensus GCUUAGUCAGCGAGCCGCUU_UUGAUUAUGAGUCAGGUGGA__A____ACACACACCUGGCAUUCGGGACUUACUUUUGCACUUGGCCAGGCCACUGGCCACCUGCAGGAAUCCG ....((((((((...))))............((((((((..............))))))))......))))...(((((((..(((((((....)))))))..)))))))..... (-39.32 = -39.08 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:26 2006