Locus 6129

Sequence ID X_DroMel_CAF1
Location 15,692,737 – 15,692,857
Length 120
Max. P 0.761279
window9966

overview

Window 6

Location 15,692,737 – 15,692,857
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.83
Mean single sequence MFE -38.12
Consensus MFE -32.24
Energy contribution -32.44
Covariance contribution 0.20
Combinations/Pair 1.14
Mean z-score -1.47
Structure conservation index 0.85
SVM decision value 0.50
SVM RNA-class probability 0.761279
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15692737 120 - 22224390
CGAUGAAUCCGUCAGGUCGGACUGGUGGAAACAGCUUAAUCUGUGCAGCGAUGGCGUUGAGUUCCAACGUAUAAAAUCCGCGAUGCGUUGGACGACAUUUGGAUAUCAUCACAACUGGGA
.((((((((((....((((.((((.((....)).)..........(((((....))))))))((((((((((..........))))))))))))))...))))).))))).......... ( -39.10)
>DroSec_CAF1 3781 120 - 1
CGAUGAAUCCGUCAGAUCGGACUGGUGGAAACAGCUUAGUCUGUGCAGCGAUGGCGCUGAGUUCCAACGGAUAAAAUCCGCGAUGCGUUGGACGACAUUUGGAUAUCAUCACAACUGGGA
.((((((((((((....((((((((((....))..))))))))..(((((....))))).((.(((((((((...))))((...))))))))))))....)))).))))).......... ( -40.30)
>DroSim_CAF1 3786 120 - 1
CGAUGAAUCCGUCAGAUCGGACUGGUGGAAACAGCUUAGUCUGUGCAGCGAUGGCGCUGAGUUCCAACGGAUAAAAUCCGCGAUGCGUUGGACGACAUUUGGAUAUCAUCACAACUGGGA
.((((((((((((....((((((((((....))..))))))))..(((((....))))).((.(((((((((...))))((...))))))))))))....)))).))))).......... ( -40.30)
>DroEre_CAF1 3774 120 - 1
CGAUGAAUCCAUCAGAUCAGACUGGUGGAAACAGCUUAGUCUGUGUAGCGAUGCCAAUGAGUUCCAACGGAUUAAAUCUGCGAUGCGUUGGACGACAUUUGGAUAUCAUCACAAUUGGGA
.......((((((((......)))))))).....((((((.((((....((((((((((...(((((((.(((........))).)))))))...)).)))).))))..)))))))))). ( -36.90)
>DroYak_CAF1 3713 120 - 1
CGAUGAAUCUAUCAGAUCGGACUGGUGGAAACAGCUUAGUCUGUGCAGCGAUGGCGAUGAGUUCCAACGGAUAAAAUCCGCGAUGCGAUGGACGACAUUUGGAUAUCAUCACAACUGGGA
.......((((((((......)))))))).....((((((.(((...((....))(((((..((((.(((((...))))).((((((.....)).))))))))..)))))))))))))). ( -34.00)
>consensus
CGAUGAAUCCGUCAGAUCGGACUGGUGGAAACAGCUUAGUCUGUGCAGCGAUGGCGAUGAGUUCCAACGGAUAAAAUCCGCGAUGCGUUGGACGACAUUUGGAUAUCAUCACAACUGGGA
.((((((((((......((((((((((....))..))))))))..(((((....))))).((.((((((.((..........)).))))))))......))))).))))).......... (-32.24 = -32.44 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:00 2006