Locus 6128

Sequence ID X_DroMel_CAF1
Location 15,692,460 – 15,692,577
Length 117
Max. P 0.500000
window9965

overview

Window 5

Location 15,692,460 – 15,692,577
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 84.36
Mean single sequence MFE -26.48
Consensus MFE -15.61
Energy contribution -14.57
Covariance contribution -1.04
Combinations/Pair 1.30
Mean z-score -2.01
Structure conservation index 0.59
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15692460 117 + 22224390
CAGUCUGACCAAAACUGUAAGCAUAAAAUUAAAAAAAAAUUAGCUGCACGGAUAUGUUUAAUCCGUGAUAUAUUACCUAAAAGAAAACAAAGGGGCCGAUUUGUUUGGUUCAGAGUG
((.((((((((((..((....)).............((((..(((.(((((((.......)))))))........(((............))))))..)))).))))).))))).)) ( -28.10)
>DroSec_CAF1 3506 115 + 1
CAGUCUGACCAAAACUGUAGGCAUAAAAAUUAAAAAAAAUUAGGUGCAC--AUAUGUGUAUUGUGUGAUAUACUACCUAAAAGAAAACAAAGGGGCCGAUUUGUUUGGUUCAGAGUG
((.((((((((((......(((.................((((((((((--(((.......))))))......))))))).......(....).)))......))))).))))).)) ( -27.80)
>DroSim_CAF1 3509 117 + 1
CAGUCUGACCAAAACUGUAGGCAUAAAAAUUAAAAAAAAUUAGGUGCACGGAUAUGUGUAUUGUGUGAUAUACUACCUAAAAGAAAACAAAGGGGCCGAUUUGUUUGGUUCAGAGUG
((.((((((((((......(((....................((((((((....)))))))).............(((............))).)))......))))).))))).)) ( -27.60)
>DroEre_CAF1 3497 117 + 1
CAGUCUGACCAAAGCUGUAAAUAUGAAAGAUAAAAUAAAUUUGGUGCACGGAUAUAUUUAAUAUAUGCUGCAUUACCUAAAUGAAAAUAAAGGUGCCGAUUUGUUUGGUUCAGAGUG
((.(((((((....((...........))...(((((((((.((((((.(.((((((...)))))).))))...((((..((....))..)))))))))))))))))).))))).)) ( -26.40)
>DroYak_CAF1 3436 117 + 1
CAGUCUGGCCAAAGCUGUGAAUUUAAAAGGUAAACAAAGUUAUGUGUGCUGAGAAAUUUAAUAUGUGAUAUACUACCUAAAAGAAAAUAAAGGAGCCGAUUUGUUUGGUUCGGAGUG
((.((((((....)))...........(((((......(((((((((...((....))..)))))))))....)))))..............(((((((.....)))))))))).)) ( -22.50)
>consensus
CAGUCUGACCAAAACUGUAAGCAUAAAAAUUAAAAAAAAUUAGGUGCACGGAUAUGUUUAAUAUGUGAUAUACUACCUAAAAGAAAACAAAGGGGCCGAUUUGUUUGGUUCAGAGUG
((.((((((((((....((((((((...........................))))))))...............(((............)))..........))))).))))).)) (-15.61 = -14.57 +  -1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:59 2006