Locus 6127

Sequence ID X_DroMel_CAF1
Location 15,690,944 – 15,691,043
Length 99
Max. P 0.779057
window9964

overview

Window 4

Location 15,690,944 – 15,691,043
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.27
Mean single sequence MFE -22.03
Consensus MFE -16.02
Energy contribution -15.42
Covariance contribution -0.61
Combinations/Pair 1.39
Mean z-score -1.31
Structure conservation index 0.73
SVM decision value 0.55
SVM RNA-class probability 0.779057
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15690944 99 + 22224390
GGGUAUCCUCGUUCUCCGAGUACUCGGACUCCUCCGAA---UCCGAAUUGCUGCCGUAAUUCAUCAGCUCCUCGCCGUUUUCAGUGCUCGCACUUGCCAUCU
.((((.....((....((((((((.(((....)))(((---..((((((((....)))))))....((.....)).)..))))))))))).)).)))).... ( -24.70)
>DroPse_CAF1 2030 95 + 1
----UUCAUCGUGUUCCGAAUAUUCGGACUCAUCCGAUUCUUCAAAAUUUUGAUCAAAGUCUAAUAAGUUAU---CCUGCUCACCGAUUGUAUUCGCCAUAC
----......((((..(((((((((((........((((..((((....))))....)))).....(((...---...)))..))))..)))))))..)))) ( -16.00)
>DroSec_CAF1 1936 99 + 1
GGAUAUCCUCGUUCUCCGAGUACUCGGACUCCUCCGAA---UCCGAAUUGCUGCCGUAAUUCAUCAGCUCCUCGCCGUUUUCAGUGCUCGCACUCGCCAUCU
((....))........((((((((.(((....)))(((---..((((((((....)))))))....((.....)).)..)))))))))))............ ( -23.70)
>DroSim_CAF1 1940 99 + 1
GGGUAUCCUCGUUCUCCGAGUACUCGGACUCCUCCGAA---UCCGAAUUGCUGCCGUAAUUCAUCAGCUCCUCGCCGUUUUCAGUGCUCGCACUCGCCAUCU
(((....)))......((((((((.(((....)))(((---..((((((((....)))))))....((.....)).)..)))))))))))............ ( -23.40)
>DroEre_CAF1 1948 99 + 1
GGGUAUUUUCGUUCUCCGAGUACUCGGACUCCUCCGAA---UCCGAAUUGCCGUCGUAAUUCAAGAACUCCUCGCCGUUUUCACUGCUCGCACCCGCCAUUU
((((......(((((((((....)))))..........---...(((((((....)))))))..)))).....((.((....)).))....))))....... ( -23.70)
>DroYak_CAF1 1955 99 + 1
GCGUAUCCUCGUUCUCCGAGCACUCGGACUCUUCCGAG---UCGGAAUUUCCGCCGUAAUUUAAAUACUCCUCUCCGUUUUCACUGCUCGCACUCGCCAUCU
(((......)))....((((((((((((....))))))---)(((.....)))................................)))))............ ( -20.70)
>consensus
GGGUAUCCUCGUUCUCCGAGUACUCGGACUCCUCCGAA___UCCGAAUUGCUGCCGUAAUUCAACAACUCCUCGCCGUUUUCACUGCUCGCACUCGCCAUCU
................((((((.(((((....))))).......(((((((....)))))))......................))))))............ (-16.02 = -15.42 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:58 2006