Locus 6126

Sequence ID X_DroMel_CAF1
Location 15,690,750 – 15,690,840
Length 90
Max. P 0.979085
window9963

overview

Window 3

Location 15,690,750 – 15,690,840
Length 90
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.13
Mean single sequence MFE -32.13
Consensus MFE -20.84
Energy contribution -21.23
Covariance contribution 0.39
Combinations/Pair 1.17
Mean z-score -2.22
Structure conservation index 0.65
SVM decision value 1.83
SVM RNA-class probability 0.979085
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15690750 90 - 22224390
--------------------AACAAAAGCG------GUAAAACUAGCAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGUUGCUCAAG
--------------------.......(((------(.....)).))....(.((((..(((((..(((.(((((.((((....))))))))))))....)))))..)))).)... ( -30.30)
>DroSec_CAF1 1742 90 - 1
--------------------AACAAGAGCG------GUAAGACGAACAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCUGCUCAAG
--------------------.....((((.------(((...((.....)).)))((..(((((..(((.(((((.((((....))))))))))))....)))))..))))))... ( -34.70)
>DroSim_CAF1 1746 90 - 1
--------------------AACAAGAGCG------GUAAGACGAACAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCUGAGGAUGUGCUGCUCAAG
--------------------.....((((.------(((...((.....)).)))((..(((((..(((.(((((.((((....))))))))))))....)))))..))))))... ( -34.70)
>DroEre_CAF1 1754 96 - 1
--------------------AACAAGAGCGGCGGCAGUAGGAUCAGCAUAGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCGGCUCAAG
--------------------.....((((.(((......((((((((...(((((...)))))(((((....).))))......))))))))..(((....))).))).))))... ( -34.60)
>DroYak_CAF1 1758 96 - 1
--------------------AACAAGAGUGGAGGCAGUAGGAACAGCAUGGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCGGCUCAAG
--------------------..........(((.(..........(((....))).(..(((((..(((.(((((.((((....))))))))))))....)))))..)).)))... ( -32.30)
>DroPer_CAF1 1673 108 - 1
CAGCCUCCGAAGGGAACUCAAAUAAAGGU--------UGCGAACAAUAAUGGCUCUGGACAUCCGAACUACGGAUUUGGAAAGCGGUGGUCAAAAUCGGAAGAUGUUUUGCUCAAA
((((((((....)))...........)))--------)).((.(((...((((((((....(((((((....).))))))...))).)))))..(((....)))...))).))... ( -26.20)
>consensus
____________________AACAAGAGCG______GUAAGACCAACAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCUGCUCAAG
...................................................(.((.((((((((..(((.(((((.((((....))))))))))))....)))))))).)).)... (-20.84 = -21.23 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:57 2006