Locus 6116

Sequence ID X_DroMel_CAF1
Location 15,666,285 – 15,666,397
Length 112
Max. P 0.925498
window9939

overview

Window 9

Location 15,666,285 – 15,666,397
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.40
Mean single sequence MFE -40.35
Consensus MFE -27.19
Energy contribution -26.08
Covariance contribution -1.11
Combinations/Pair 1.50
Mean z-score -2.15
Structure conservation index 0.67
SVM decision value 1.17
SVM RNA-class probability 0.925498
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15666285 112 - 22224390
CCUUCGCAUGGCCGUGCGCAACAAUUUGGCUGGUGCCGAAGAUCUCUUUGUGCGAAAGUUCAACAAGCUCUUUACAGCCGGCCAGUAUGCUGAAGCGGCUAAAGUUGCUGCC
.....((((((((((...((.((..(((((((((...(((((.((..(((.((....)).)))..)).)))))...)))))))))..)).))..)))))))....))).... ( -42.80)
>DroGri_CAF1 4078 112 - 1
UUUACGCAUGGCUGUACGCAACAAUUUGGCCGGCGCCGAGGAUCUAUUUGUGCGUAAAUUCAAUAAACUCUUCACCGCCGGCCAAUAUGCCGAGGCGGCCAAGGUUGCCGCA
.....((.(((((((.....)))..((((((((((..(((((.....(((..........))).....)))))..))))))))))...)))).((((((....)))))))). ( -43.60)
>DroWil_CAF1 4101 112 - 1
AUUACGAAUGGCAGUGCGCAACAAUUUGGCCGGUGCCGAAGAUUUGUUUGUACGCAAAUUUAAUAAACUCUUCACCGCCGGUCAAUAUGCCGAAGCCGCCAAAGUGGCCGCC
....((..(((((((.....))...((((((((((..(((((...((((((...........)))))))))))..))))))))))..)))))..(((((....))))))).. ( -36.90)
>DroMoj_CAF1 4054 112 - 1
CCUGCGCAUGGCCGUGCGCAACAAUUUGGCUGGCGCUGAGGAUCUGUUUGUGCGCAAAUUCAAUAAGCUCUUUGGCGCUGGCCAAUACGCCGAGGCGGCCAAGGUGGCUGCA
..(((((((....))))))).....(((((..((((..((((.(((((((....)))))......)).))))..))))..))))).........((((((.....)))))). ( -51.80)
>DroAna_CAF1 11915 112 - 1
GCUACGCAUGGCUGUUCGUAAUAAUUUGGCCGGUGCCGAAGAACUUUUUGUACGCAAGUUUAAUAAGCUAUUUACAGCAGGUCAAUAUGCUGAAGCUGCAAAAGUAGCUGCU
((((((((((((((............))))).)))).........(((((((.((.((((.....)))).....(((((........)))))..)))))))))))))).... ( -31.00)
>DroPer_CAF1 87226 112 - 1
CCUGCGAAUGGCUGUACGAAACAAUUUAGCAGGAGCGGAGGAUCUUUUUGUCCGCAAGUUCAACAAGCUGUUUACUGCCGGUCAGUUCGCCGAAGCGGCCAAAGUUGCUGCU
...((((.(((((((.............((((..(((((.((.....)).))))).((((.....)))).....))))((((......))))..)))))))...)))).... ( -36.00)
>consensus
CCUACGCAUGGCUGUGCGCAACAAUUUGGCCGGUGCCGAAGAUCUGUUUGUGCGCAAAUUCAAUAAGCUCUUUACCGCCGGCCAAUAUGCCGAAGCGGCCAAAGUUGCUGCA
........((((.((.....))...((((((((((..(((((.((..(((..........)))..)).)))))..))))))))))...)))).((((((....))))))... (-27.19 = -26.08 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:35 2006