Locus 6113

Sequence ID X_DroMel_CAF1
Location 15,658,862 – 15,658,969
Length 107
Max. P 0.825498
window9935

overview

Window 5

Location 15,658,862 – 15,658,969
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.02
Mean single sequence MFE -39.64
Consensus MFE -23.28
Energy contribution -24.57
Covariance contribution 1.28
Combinations/Pair 1.33
Mean z-score -2.43
Structure conservation index 0.59
SVM decision value 0.70
SVM RNA-class probability 0.825498
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15658862 107 - 22224390
UUGCCGAUACAUAGAUUAUACGGUGGCAGGACUGUCACUGUACGAUCCUCAUAGGCGGUAUGUUGCUGCUGGAGUGUUGGCUCUUGUACGUUGGG---------AGCAA----UGCUUGU
..((((((((...(((..((((((((((....))))))))))..))).((...((((((.....)))))).)))))))))).......(((((..---------..)))----))..... ( -42.30)
>DroVir_CAF1 1593 109 - 1
UUGGCGAGACAGGCGCUGUAGGGCGGCGG------CGGUGGACGGUCCUGGUAAUUCACAAGUUGCUGCUGCU--GUU-GCUGUU--GCGUUGAGUGUUGCUGCAGCAACAUGUGUGUGU
........(((.((((..(((.(((((((------(((..(.((((...((((((......))))))))))).--.))-))))))--)).))).(((((((....))))))))))).))) ( -43.60)
>DroSec_CAF1 1620 107 - 1
UUGCCGAUACAUAGAUUAUACGGUGGCAGGACUGUCACUGUACGGUCCUCAUAGGCGGUAUGUUGCUGCUGGAGUGUUGGCUCUUGUACGUUGGG---------AGCAA----UGCUUGU
..((((((((...(((..((((((((((....))))))))))..))).((...((((((.....)))))).)))))))))).......(((((..---------..)))----))..... ( -42.60)
>DroSim_CAF1 610 107 - 1
UUGCCGAUACAUAGAUUAUACGGUGGCAGGACUGUCACUGUACGGUCCUCAUAGGCGGUAUGUUGCUGCUGGAGUGUUGGCUCUUGUACGUUGGG---------AGCAA----UGCUUGU
..((((((((...(((..((((((((((....))))))))))..))).((...((((((.....)))))).)))))))))).......(((((..---------..)))----))..... ( -42.60)
>DroEre_CAF1 1545 107 - 1
UUGCCGAUACAUAGAUUAUACGGGGGAAGGACUGUUACUAUACGGUCCUCAUAGGCGGUAUGUUGCUGCUGGAGUGUUGGCUCUUGUACGUUGGG---------AGCAA----UGCUUGA
..((((((((..................(((((((......)))))))((...((((((.....)))))).)))))))))).......(((((..---------..)))----))..... ( -34.90)
>DroYak_CAF1 738 107 - 1
UUGCCGAUACAUAGAUUAUACGGGGGAAGGACUGAUACUGUACGAUCCUCAUAGGCGGUAUGUUGCUGCUGGAGUGUUGGCUCUUGUACGUUGGG---------AGCAA----UGCUUGA
..((((((((...(((..(((((..............)))))..))).((...((((((.....)))))).)))))))))).......(((((..---------..)))----))..... ( -31.84)
>consensus
UUGCCGAUACAUAGAUUAUACGGUGGCAGGACUGUCACUGUACGGUCCUCAUAGGCGGUAUGUUGCUGCUGGAGUGUUGGCUCUUGUACGUUGGG_________AGCAA____UGCUUGU
..((((((((...(((..((((((((........))))))))..))).((...((((((.....)))))).))))))))))........................(((.....))).... (-23.28 = -24.57 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:31 2006