Locus 6112

Sequence ID X_DroMel_CAF1
Location 15,657,945 – 15,658,050
Length 105
Max. P 0.664504
window9934

overview

Window 4

Location 15,657,945 – 15,658,050
Length 105
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 67.96
Mean single sequence MFE -24.38
Consensus MFE -16.70
Energy contribution -16.10
Covariance contribution -0.60
Combinations/Pair 1.43
Mean z-score -0.91
Structure conservation index 0.69
SVM decision value 0.28
SVM RNA-class probability 0.664504
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15657945 105 + 22224390
G---AUGAUUUAAAUGGCGACUCCU--UUCUUCCCCAGAUACGAAAGCAACGAGAAUGUCGUGCUCGUGUGCUCCACAAUCGUUUGCUCCUUUGGCAAGCAAGUGGUGGA
.---..........(((.((.....--....)).))).((((((..(((.(((.....))))))))))))..(((((....(((((((.....))))))).....))))) ( -25.50)
>DroVir_CAF1 638 80 + 1
-----------------------------C-CUUGCAGAUAUGAAAGUAAUGAGAACAUUGAGCUCGUCUGCUCGACAAUUGUCUGCUCGUUUGGCAAACAGGUUGUGGA
-----------------------------.-...((((((..(....(((((....)))))..)..))))))((.((((((((.((((.....)))).))).))))).)) ( -21.50)
>DroEre_CAF1 685 98 + 1
----------UUAAUAAUAACGCAU--UUCAUCCGCAGAUACGAAAGCAACGAGAAUGUCGUGCUCGUGUGCUCCACAAUCGUUUGCUCUUUUGGCAAGCAGGUGGUGGA
----------...............--.......(((..(((((..(((.(((.....))))))))))))))(((((.((((((((((.....))))))).))).))))) ( -27.20)
>DroWil_CAF1 592 107 + 1
UGCUCUUAUUUCAAAUUCAAUUUC---UCAUCUCAUAGAUAUGAAAGCAAUGAGAAUAUUGAACUUGUCUGCUCGACAAUCGUUUGCUCCUUUGGCAAACAGGUGGUGGA
.((........(((.(((((((((---((((.((((....)))).....))))))).)))))).)))...))((.((.((((((((((.....))))))).))).)).)) ( -24.40)
>DroMoj_CAF1 673 91 + 1
------------------AAUUCCUCACUC-CACACAGAUAUGAAAGCAAUGAGAACAUUGAGCUCGUCUGCUCGACAAUCGUCUGCUCGUUCGGCAAACAGGUGGUGGA
------------------...(((.....(-(((.......((((((((((((.....((((((......))))))...)))).))))..))))........)))).))) ( -22.86)
>DroAna_CAF1 333 92 + 1
----------UCAUUAUUAAAUCGU--U------GCAGAUAUGAGAGUAAUGAGAACGUAGUACUCGUUUGCUCAACGAUCGUUUGCUCAUUCGGUAAACAGGUAGUGGA
----------((((((((..(((((--(------(.((..(((((.(..(((....)))..).)))))...))))))))).(((((((.....))))))).)))))))). ( -24.80)
>consensus
__________U_AAU___AACUCCU__UUC_CCCGCAGAUAUGAAAGCAAUGAGAACAUUGAGCUCGUCUGCUCGACAAUCGUUUGCUCCUUUGGCAAACAGGUGGUGGA
................................((((.(((.....(((((((((.........))))).)))).....)))(((((((.....))))))).....)))). (-16.70 = -16.10 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:30 2006