Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,687,295 – 1,687,560 |
Length | 265 |
Max. P | 0.996487 |
Location | 1,687,295 – 1,687,412 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.34 |
Mean single sequence MFE | -42.62 |
Consensus MFE | -32.34 |
Energy contribution | -33.02 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.13 |
Mean z-score | -2.84 |
Structure conservation index | 0.76 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1687295 117 + 22224390 GAGCGUGAAAGUGAGUAGAGA--GAAUUUCGCUGUCUUAUUGAGCGAAUUUCGAAUGUCUCCCCAAAAGACCCGUUUCUUUCGGUGUAAGACUUUUGGCGCUCUCUUCUCGCCGCUCUC- (((((.....(((((.(((((--(...((((((.........))))))..(((((.((((..((.(((((......))))).))....)))).)))))..)))))).))))))))))..- ( -38.90) >DroSec_CAF1 27492 117 + 1 GAGCGUGAAAGUGAGUAGAGA--GAAUUUCGCUGUCGUAUUGAGCGAAUUUCGAAUGUCUCGUCAAAAGACCCGUUUCUUUCGGUGUAAGACUUUUGGCGCUCUCUUCUCGCCGCUCUC- (((((.....(((((.(((((--(((.((((((.........)))))).)))........((((((((((((((.......))).))....))))))))).))))).))))))))))..- ( -41.80) >DroSim_CAF1 21567 117 + 1 GAGCGUGAAGGUGAGUAGAGA--GAAUUUCGCUGUCGUAUUGAGCGAAUUUCGAAUGUCUCGUCAAAAGACCCGUUUCUUUCGGUGUAAGACUUUUGGCGCUCUCUUCUCGCCGCUCUC- ((((.....((((((.(((((--(((.((((((.........)))))).)))........((((((((((((((.......))).))....))))))))).))))).))))))))))..- ( -42.70) >DroEre_CAF1 23210 119 + 1 GAGAGUGAGAUUGAGUGGAGAGCGAUUUUCGCAGUCGUGUUGAGCGAAUUCCGAAUGGCAUGCCAAAAGACCCGUUUCUUUCGGUGUAAGAGUUUUGGCGCUCUCUUCUCUCCACUCUC- (((((((.((..(((.((((((((...((((...((((.....))))....))))...)..(((((((.(((((.......))).)).....)))))))))))))).))))))))))))- ( -46.10) >DroYak_CAF1 21147 118 + 1 GAGAGUGAGAGUGAGUAGAGA--GAAUUUCGCAAUCGUGUUGAGCGAAAUCCGAAUCGCAUGCCAAAAGACCCGUUUCUUGAGGUGUAAGACUUUUGGCGCUCUCUUCUCGUCGCUCUCA ((((((((...((((.(((((--(.(((((((...........)))))))...........(((((((((((((.....)).)))......)))))))).)))))).)))))))))))). ( -43.60) >consensus GAGCGUGAAAGUGAGUAGAGA__GAAUUUCGCUGUCGUAUUGAGCGAAUUUCGAAUGUCUCGCCAAAAGACCCGUUUCUUUCGGUGUAAGACUUUUGGCGCUCUCUUCUCGCCGCUCUC_ (((.(((...(((((.(((((..(((.(((((...........))))).)))........((((((((((((((.......))).))....))))))))).))))).)))))))).))). (-32.34 = -33.02 + 0.68)
Location | 1,687,295 – 1,687,412 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.34 |
Mean single sequence MFE | -38.12 |
Consensus MFE | -27.40 |
Energy contribution | -28.52 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.06 |
Mean z-score | -3.00 |
Structure conservation index | 0.72 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1687295 117 - 22224390 -GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGGGGAGACAUUCGAAAUUCGCUCAAUAAGACAGCGAAAUUC--UCUCUACUCACUUUCACGCUC -..((((((.(((.(((((.........(((((...((((((((......)))))))).)))))....(((.((((((.........)))))).)))--))))).))).).....))))) ( -39.00) >DroSec_CAF1 27492 117 - 1 -GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGACGAGACAUUCGAAAUUCGCUCAAUACGACAGCGAAAUUC--UCUCUACUCACUUUCACGCUC -..((((((.(((.(((((.........(((((...(((.......)))(((....))))))))....(((.((((((.........)))))).)))--))))).))).).....))))) ( -34.30) >DroSim_CAF1 21567 117 - 1 -GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGACGAGACAUUCGAAAUUCGCUCAAUACGACAGCGAAAUUC--UCUCUACUCACCUUCACGCUC -..((((((.(((.(((((.........(((((...(((.......)))(((....))))))))....(((.((((((.........)))))).)))--))))).))).)).....)))) ( -35.20) >DroEre_CAF1 23210 119 - 1 -GAGAGUGGAGAGAAGAGAGCGCCAAAACUCUUACACCGAAAGAAACGGGUCUUUUGGCAUGCCAUUCGGAAUUCGCUCAACACGACUGCGAAAAUCGCUCUCCACUCAAUCUCACUCUC -((((((((((((..(((((((((((((..(((....(....)....)))..)))))))...((....))..(((((...........)))))....))))))..)))..)).))))))) ( -42.00) >DroYak_CAF1 21147 118 - 1 UGAGAGCGACGAGAAGAGAGCGCCAAAAGUCUUACACCUCAAGAAACGGGUCUUUUGGCAUGCGAUUCGGAUUUCGCUCAACACGAUUGCGAAAUUC--UCUCUACUCACUCUCACUCUC ((((((....(((.(((((((((((((((......((((........))))))))))))..)).....(((((((((...........)))))))))--))))).))).))))))..... ( -40.10) >consensus _GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGGCGAGACAUUCGAAAUUCGCUCAAUACGACAGCGAAAUUC__UCUCUACUCACUUUCACGCUC .(((((....(((.(((((..((((((((.(((....(....)....))).)))))))).........(((.(((((...........))))).)))..))))).))).)))))...... (-27.40 = -28.52 + 1.12)
Location | 1,687,333 – 1,687,447 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.57 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -27.04 |
Energy contribution | -28.20 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1687333 114 - 22224390 AAUUCAAACGAACGACGUCGACGUCGCUGCGAAAA------GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGGGGAGACAUUCGAAAUUCGCUCA ........((..(((((....)))))...))....------..((((((((.........))))....(((((...((((((((......)))))))).)))))...........)))). ( -37.60) >DroSec_CAF1 27530 114 - 1 AAUUUAAACGAACGACGUCGACGUCGCAGCGAAAA------GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGACGAGACAUUCGAAAUUCGCUCA ........((..(((((....)))))...))....------..((((((((.........))))....(((((...(((.......)))(((....))))))))...........)))). ( -32.90) >DroSim_CAF1 21605 114 - 1 AAUUUAAACGAACGACGUCGACGUCGCAGCGAAAA------GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGACGAGACAUUCGAAAUUCGCUCA ........((..(((((....)))))...))....------..((((((((.........))))....(((((...(((.......)))(((....))))))))...........)))). ( -32.90) >DroEre_CAF1 23250 114 - 1 AAUUCGAGUGAACGACGUCGACGCCGCAGCGAAAA------GAGAGUGGAGAGAAGAGAGCGCCAAAACUCUUACACCGAAAGAAACGGGUCUUUUGGCAUGCCAUUCGGAAUUCGCUCA .....(((((((...(.....(((....)))....------..((((((......(((((........)))))...((((((((......))))))))....)))))))...))))))). ( -32.70) >DroYak_CAF1 21185 120 - 1 AAUUCGAGUGAACGACGUCGACGUCGGCGCCAAAAAAAAAUGAGAGCGACGAGAAGAGAGCGCCAAAAGUCUUACACCUCAAGAAACGGGUCUUUUGGCAUGCGAUUCGGAUUUCGCUCA .....(.(((..(((((....))))).))))............((((((...(((..(...((((((((......((((........))))))))))))...)..))).....)))))). ( -34.50) >consensus AAUUCAAACGAACGACGUCGACGUCGCAGCGAAAA______GAGAGCGGCGAGAAGAGAGCGCCAAAAGUCUUACACCGAAAGAAACGGGUCUUUUGGCGAGACAUUCGAAAUUCGCUCA ........((..(((((....)))))...))............((((((...(((.....(((((((((.(((....(....)....))).))))))))).....))).....)))))). (-27.04 = -28.20 + 1.16)
Location | 1,687,412 – 1,687,525 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.28 |
Mean single sequence MFE | -40.85 |
Consensus MFE | -35.52 |
Energy contribution | -34.88 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.15 |
Mean z-score | -2.33 |
Structure conservation index | 0.87 |
SVM decision value | 2.70 |
SVM RNA-class probability | 0.996487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1687412 113 - 22224390 U--UUUUGUCGGCGGAGCGCGCAGCGAAUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGGAAUUCAAACGAACGACGUCGACGUCGCUGCGAAAA----- .--.((((....))))((((((((.(....).))))))))(((((((((.(((..(((((..((....(((((........)))))..))..)))))))).))))))))).....----- ( -42.70) >DroSec_CAF1 27609 114 - 1 UU-UUUUGUCCGCGGAGCGCGCAGCGAUUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUCAAACGGAAUUUAAACGAACGACGUCGACGUCGCAGCGAAAA----- .(-((((((.(((...((((((((.(....).)))))))))))((((((.(((..(((((..(((.......)))..((.........))..)))))))).)))))).)))))))----- ( -40.20) >DroSim_CAF1 21684 113 - 1 U--UUUUGUCGGCGGAGCGCGCAGCGAUUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGGAAUUUAAACGAACGACGUCGACGUCGCAGCGAAAA----- .--((((((...((..((((((((.(....).)))))))).))((((((.(((..(((((.((....))........((.........))..)))))))).)))))).)))))).----- ( -38.10) >DroEre_CAF1 23329 114 - 1 UAU-UUUGUCGGCGGAGCGCGCAGCGAAUAACCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGAAAUUCGAGUGAACGACGUCGACGCCGCAGCGAAAA----- ..(-(((((.......((((((((........))))))))((((((.(((((..(((((((((..................)))))).)))....))))).)))))).)))))).----- ( -40.67) >DroYak_CAF1 21265 119 - 1 -AUUUGUGUCGGCGGAGCGCGCAGCGAAUGCUCUGCGUGUGCGGCGACGGUGAAUCGUCGAAUGAAAAUGAAUGAAACGAAAUUCGAGUGAACGACGUCGACGUCGGCGCCAAAAAAAAA -......((((.((..((((((((.(....).)))))))).)).))))((((..(((((((((..................)))))).))).(((((....))))).))))......... ( -42.57) >consensus U__UUUUGUCGGCGGAGCGCGCAGCGAAUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGGAAUUCAAACGAACGACGUCGACGUCGCAGCGAAAA_____ ...........((...((((((((.(....).))))))))((((((.(((((..((((((..((((..((.......))...))))..)).))))))))).)))))).)).......... (-35.52 = -34.88 + -0.64)
Location | 1,687,447 – 1,687,560 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.16 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -32.84 |
Energy contribution | -33.28 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.77 |
Structure conservation index | 0.87 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1687447 113 - 22224390 CGUCGUGGGAAA-ACA----GUUUGAUUUAAUUUUUGGUUU--UUUUGUCGGCGGAGCGCGCAGCGAAUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGG ....((......-)).----((((.(((((..((((.((((--....((((.((..((((((((.(....).)))))))).)).))))((((...)))))))).))))))))).)))).. ( -35.40) >DroSec_CAF1 27644 114 - 1 CGUCGUGGGAAA-ACA----GUUUAAUUUAUUUUUCAGUUUU-UUUUGUCCGCGGAGCGCGCAGCGAUUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUCAAACGG ....((......-)).----((((.(((((((((.((.....-......((((...((((((((.(....).))))))))))))((((((....))))))..))))))))))).)))).. ( -33.90) >DroSim_CAF1 21719 113 - 1 CGUCGUGGGAAA-ACA----GUUUAAUUUAUUUUUCGGUUU--UUUUGUCGGCGGAGCGCGCAGCGAUUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGG ....((......-)).----((((.((((((((((((((((--..((((((.((..((((((((.(....).)))))))).)).)))))).))))))......)))))))))).)))).. ( -36.60) >DroEre_CAF1 23364 119 - 1 CGUCGUGGGAAAAACACUUUGUUUGAUUUAUUUUUCGGUUUAU-UUUGUCGGCGGAGCGCGCAGCGAAUAACCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGA ....(((.......))).((((((.((((((((((((((((..-.((((((.((..((((((((........)))))))).)).)))))).))))))......)))))))))).)))))) ( -40.30) >DroYak_CAF1 21305 114 - 1 CGUCGUGGGAAAAACACUUUGUUUGAUUUAUUUUU------AUUUGUGUCGGCGGAGCGCGCAGCGAAUGCUCUGCGUGUGCGGCGACGGUGAAUCGUCGAAUGAAAAUGAAUGAAACGA ....(((.......))).((((((.((((((((((------((((((((((.((..((((((((.(....).)))))))).)).))))).........))))))))))))))).)))))) ( -42.30) >consensus CGUCGUGGGAAA_ACA____GUUUGAUUUAUUUUUCGGUUU__UUUUGUCGGCGGAGCGCGCAGCGAAUGCUCUGCGUGUGCGGCGACGGCGAAUCGUCGAAUGAAAAUGAAUGAAACGG ....................((((.((((((((((............((((.((..((((((((.(....).)))))))).)).))))((((...))))....)))))))))).)))).. (-32.84 = -33.28 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:25 2006