Locus 6109

Sequence ID X_DroMel_CAF1
Location 15,653,517 – 15,653,625
Length 108
Max. P 0.669104
window9927

overview

Window 7

Location 15,653,517 – 15,653,625
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.92
Mean single sequence MFE -38.99
Consensus MFE -31.31
Energy contribution -32.37
Covariance contribution 1.06
Combinations/Pair 1.06
Mean z-score -1.34
Structure conservation index 0.80
SVM decision value 0.29
SVM RNA-class probability 0.669104
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15653517 108 + 22224390
GCAUAAUGU------------UUUCAGUUGGACCCGGCACCAUACCAUCACCGUGGACACCAGUGAAUGCCGGUCCUCCAGGCGCACUUGGAUCGGCAGACACAAAUGGCAGCAUGGUGG
.(((.((((------------(....((((....)))).((((.((((....))))......(((..(((((((((...((.....)).)))))))))..)))..)))).))))).))). ( -36.00)
>DroVir_CAF1 57226 114 + 1
UCUCUGCUA------UUUGUUUUGCAGUCGGACCCGGCACCAUACCAUCCCCGUGGCCACCAGUGAAUGCCGGUCCUCCUGGUCCCCUGGGAUCGGCAGACACAAAUGGCAGCAUGGUGG
...((((((------((((((((((((..(((((.((((.....((((....)))).((....))..)))))))))..))(((((....))))).))))).)))))))))))........ ( -45.90)
>DroGri_CAF1 52837 120 + 1
UUUCUGCUUGGUUUUUUUCCAUUACAGUCGGACCCGGCACCAUACCAUCUCCGUGGCCACCAGUGAAUGCCGGUCCUCCUGGUCCCCUGGGAUCGGCAGACACAAAUGGCAGCAUGGUGG
....((((.(((((...............))))).)))).....(((((...((.((((...(((..((((((((((...((...)).))))))))))..)))...)))).))..))))) ( -41.96)
>DroWil_CAF1 2 90 + 1
------------------------------GACCCGGCACCAUACCAUCUCCGUGGACACCAGUGAAUGCCGGUCCUCCGGGUCCUCUGGGAUCGGCAGACACAAAUGGCAGCAUGGUGG
------------------------------.......((((((.((((....))))...((((((..((((((((((..(....)...))))))))))..)))...)))....)))))). ( -33.30)
>DroMoj_CAF1 59587 108 + 1
UCAUUGCUA------------UUGCAGUUGGACCCGGCACCAUACCAUCUCCGUGGCCACCAGUGAAUGCCGGUCCUCCUGGUCCCCUGGGAUCGGCAGACACAAAUGGCAGCAUGGUGG
....(((..------------..)))((((....))))......(((((...((.((((...(((..((((((((((...((...)).))))))))))..)))...)))).))..))))) ( -40.90)
>DroPer_CAF1 44334 102 + 1
CCAU------------------UACAGUCGGACCCGGCACCAUACCAUCUCCGUGGACCCCAGUGAAUGCCGGUCCUCCAGGUGCACUAGGUUCGGCAGACACAAAUGGAAGUAUGGUGG
((..------------------....((((....))))(((((((....(((((((...)).(((..(((((..(((..((.....)))))..)))))..)))..))))).))))))))) ( -35.90)
>consensus
UCAUUGCU_____________UUACAGUCGGACCCGGCACCAUACCAUCUCCGUGGACACCAGUGAAUGCCGGUCCUCCUGGUCCCCUGGGAUCGGCAGACACAAAUGGCAGCAUGGUGG
..........................((((....))))....((((((((((((((...)).(((..((((((((((...(.....).))))))))))..)))..)))).)).)))))). (-31.31 = -32.37 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:24 2006