Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,647,696 – 15,647,805 |
Length | 109 |
Max. P | 0.557293 |
Location | 15,647,696 – 15,647,805 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.24 |
Mean single sequence MFE | -18.05 |
Consensus MFE | -13.24 |
Energy contribution | -13.50 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.73 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15647696 109 + 22224390 CAACGGACCCGUUCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU----AGAUAAUAACACGCCCAGCGCA------ .((((....))))....(.(((((.......((((((....)))))).......................((((((((...(.....----.)...))))))))..)))))).------ ( -20.30) >DroSec_CAF1 4216 109 + 1 CAACGGGCCCGCUCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU----AGAUAAUAACACGCCCAGCGCA------ .....(((..((........)).))).....((((((....))))))...............((((....((((((((...(.....----.)...))))))))...))))..------ ( -20.10) >DroEre_CAF1 4102 101 + 1 --------UCGCCCAAAGACGCUGCUAUAACAUCUACACAUGUAUAAUAAAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU----AGAUAAUAACACGCCCAGCACA------ --------............((((.....((((......))))...........................((((((((...(.....----.)...))))))))..))))...------ ( -13.10) >DroYak_CAF1 4656 111 + 1 --------UCGCCCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAUAUGUAGAUAAUAACACGCCCAGCACUCUGUGC --------..((.((.((..((((.......((((((....)))))).......................((((((((.....((....)).....))))))))..)))).)).)).)) ( -18.70) >consensus ________CCGCCCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU____AGAUAAUAACACGCCCAGCACA______ ....................((((........(((((....)))))........................((((((((..................))))))))..))))......... (-13.24 = -13.50 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:16 2006