| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,646,751 – 15,646,892 |
| Length | 141 |
| Max. P | 0.542821 |
| Location | 15,646,751 – 15,646,857 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 83.75 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -16.97 |
| Energy contribution | -16.53 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15646751 106 + 22224390 GUGUGUGGGGAGGGGAGGAGGGCAUCGCAAGAUAUGGACGUGUGUAGCUUUAUAAGCAUAAUAUCCUAUGCCUCUAGGUGGCACACCAA---AAAAAAGAAAAAUGAAA ((((((.(..(((((...((((.(((....))).............(((.....)))......))))...)))))...).))))))...---................. ( -26.50) >DroSec_CAF1 3254 102 + 1 GUGUAUGGGGAGGGG---AGGGCAUCCCAAGAUAUGGACGUGUGUAGCUUUAUAAGCAAAAUAUCCUAUGCCUCUAGGUGGCACACCAA---AAAAAGAAAAAACGA-A ((.((((.....(((---(.....))))....)))).))((((((.(((.....))).......((((......))))..))))))...---...............-. ( -23.10) >DroEre_CAF1 3154 96 + 1 GUGUGUAGGG--------AGGGCAUCGCAAGAUAUGGAUGUGUGUAGCUUUAUAAGCAAAAUAUCCUAUGCCUCUAGGUGGCACA----AAAAAAAAAGAUAUACGA-A .(((((..((--------(((..(((....)))..((((((.....(((.....)))...))))))....))))).....)))))----..................-. ( -24.60) >consensus GUGUGUGGGGAGGGG___AGGGCAUCGCAAGAUAUGGACGUGUGUAGCUUUAUAAGCAAAAUAUCCUAUGCCUCUAGGUGGCACACCAA___AAAAAAGAAAAACGA_A ((((((((((.............(((....))).............(((.....)))......))))))(((....))).))))......................... (-16.97 = -16.53 + -0.44)
| Location | 15,646,791 – 15,646,892 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.18 |
| Mean single sequence MFE | -11.76 |
| Consensus MFE | -9.56 |
| Energy contribution | -9.56 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15646791 101 + 22224390 UGUGUAGCUUUAUAAGCAUAAUAUCCUAUGCCUCUAGGUGGCACACCAA---AAAAAAGAAAAAUGAAAAAAGAAAUCAAAAAAAUCAA--AAUUUCAUAAAAAUA (((((.((((.....(((((......)))))....)))).)))))....---...........((((((....................--..))))))....... ( -13.35) >DroSec_CAF1 3291 100 + 1 UGUGUAGCUUUAUAAGCAAAAUAUCCUAUGCCUCUAGGUGGCACACCAA---AAAAAGAAAAAACGA-AAAAGAAAUCAAAAAAAUCAA--AAUUUCAUAAAAAUA .((((.(((.....)))............(((.......)))))))...---...............-....(((((............--.)))))......... ( -10.42) >DroEre_CAF1 3186 98 + 1 UGUGUAGCUUUAUAAGCAAAAUAUCCUAUGCCUCUAGGUGGCACA----AAAAAAAAAGAUAUACGA-AAAAGAAAUCAAAAAAA---AAUCAUUUCAUAAAAAUA .((((((((.....)))...........((((.......))))..----...........)))))..-....(((((........---....)))))......... ( -11.50) >consensus UGUGUAGCUUUAUAAGCAAAAUAUCCUAUGCCUCUAGGUGGCACACCAA___AAAAAAGAAAAACGA_AAAAGAAAUCAAAAAAAUCAA__AAUUUCAUAAAAAUA (((((.(((.....))).......((((......))))..)))))...........................(((((...............)))))......... ( -9.56 = -9.56 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:15 2006