Locus 6102

Sequence ID X_DroMel_CAF1
Location 15,645,752 – 15,645,845
Length 93
Max. P 0.992824
window9914 window9915

overview

Window 4

Location 15,645,752 – 15,645,845
Length 93
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 71.90
Mean single sequence MFE -19.84
Consensus MFE -10.43
Energy contribution -10.76
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.53
SVM decision value 0.11
SVM RNA-class probability 0.589095
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15645752 93 + 22224390
UUUGUAUUUUAAACUGGCAGAGCGACGCUCGCUCGGUCGCU--CUCUCUCUCUGGCGCUCUCACGCUCUUGCUCUGCUUCUAGCCCCACAAUUCU
.((((..........((((((((((.((......((.((((--..........)))))).....))..)))))))))).........)))).... ( -21.41)
>DroEre_CAF1 2171 85 + 1
UAUGUAUUUUACACUGGGAGAGCGGCGCUCUGUCGCUCUCUUG----CACUCUCGCGCUCUCACGCU-UG-----UCUUCUAGCCCCACAAUUCU
.............(((((((((((((.....)))))))))...----.......(((......))).-..-----....))))............ ( -21.40)
>DroYak_CAF1 2609 70 + 1
UCUGUAUUUUACACUGGGAGAGCGACGCUCUU--------------------CCGCGCUCUCACGCUCUG-----UCUUCUAGCCCCACAAUUCU
..............((((((((((.((.....--------------------.)))))))))..(((..(-----....).))).)))....... ( -16.70)
>consensus
UAUGUAUUUUACACUGGGAGAGCGACGCUCUCUCG_UC_CU______C_CUCUCGCGCUCUCACGCUCUG_____UCUUCUAGCCCCACAAUUCU
..............((((((((((.(............................))))))))..(((..............))).)))....... (-10.43 = -10.76 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 15,645,752 – 15,645,845
Length 93
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 71.90
Mean single sequence MFE -24.30
Consensus MFE -15.50
Energy contribution -15.83
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.64
SVM decision value 2.35
SVM RNA-class probability 0.992824
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15645752 93 - 22224390
AGAAUUGUGGGGCUAGAAGCAGAGCAAGAGCGUGAGAGCGCCAGAGAGAGAG--AGCGACCGAGCGAGCGUCGCUCUGCCAGUUUAAAAUACAAA
....(((((....((((.(((((((..(.((((....)))))...((..(..--.((......))...).)))))))))...))))...))))). ( -28.10)
>DroEre_CAF1 2171 85 - 1
AGAAUUGUGGGGCUAGAAGA-----CA-AGCGUGAGAGCGCGAGAGUG----CAAGAGAGCGACAGAGCGCCGCUCUCCCAGUGUAAAAUACAUA
.......(((.(((......-----..-)))......((((....)))----)..(((((((.(.....).))))))))))(((((...))))). ( -25.00)
>DroYak_CAF1 2609 70 - 1
AGAAUUGUGGGGCUAGAAGA-----CAGAGCGUGAGAGCGCGG--------------------AAGAGCGUCGCUCUCCCAGUGUAAAAUACAGA
....(((((..((.......-----....((((....))))((--------------------.(((((...))))).))...))....))))). ( -19.80)
>consensus
AGAAUUGUGGGGCUAGAAGA_____CAGAGCGUGAGAGCGCGAGAG_G______AG_GA_CGAAAGAGCGUCGCUCUCCCAGUGUAAAAUACAAA
.......(((((.................((((....))))........................((((...))))))))).............. (-15.50 = -15.83 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:13 2006