Locus 6100

Sequence ID X_DroMel_CAF1
Location 15,641,589 – 15,641,709
Length 120
Max. P 0.915414
window9912

overview

Window 2

Location 15,641,589 – 15,641,709
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.33
Mean single sequence MFE -32.22
Consensus MFE -30.34
Energy contribution -30.54
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.94
SVM decision value 1.10
SVM RNA-class probability 0.915414
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15641589 120 - 22224390
GUCCCCGGUAAGCGAACCAUUUGUCUGUGUAAAAGAAAUUCUUUGUGCCAUACCAACGAAGAUACGAGAUACAACAGGAACGGCAACGGCUGAGAAGAAUCGACGGACCGGGAACCAAAA
((.((((((..((((........((((((((........(((((((.........))))))).......))).)))))..((((....)))).......))).)..)))))).))..... ( -32.46)
>DroSec_CAF1 6543 120 - 1
GUCCCCGGUAAGCGAACCAUUUGUCUGUGUAAAAGAAAUUCUUUGUGCCAUACCAACGAAGAUACGAGAUACAACAGGAACGGCAACGGCUGAGAAGAAUCGACGGACCGGGAACCAAAA
((.((((((..((((........((((((((........(((((((.........))))))).......))).)))))..((((....)))).......))).)..)))))).))..... ( -32.46)
>DroSim_CAF1 6570 120 - 1
GUCCCCGGCAAGCGAACCAUUUGUCUGUGUAAAAGAAAUUCUUUGUGCCAUACCAACGAAGAUACGAGAUACAACAGGAACGGCAACGGCUGAGAAGAAUCGACGGACCGGGAACCAAAA
((.((((((...(((........((((((((........(((((((.........))))))).......))).)))))..((((....)))).......)))...).))))).))..... ( -30.46)
>DroEre_CAF1 6024 120 - 1
GUCCCCGGUAAGCGAACCAUUUGUCUGUGUAAAAGAAAUUCUUUGUGCCAUACCAACGAAGAUACGAGAUACAACAGGAACGGCAACGGCUGAGAAGAAUCGACGGACCGGGAACCAAAA
((.((((((..((((........((((((((........(((((((.........))))))).......))).)))))..((((....)))).......))).)..)))))).))..... ( -32.46)
>DroYak_CAF1 5563 120 - 1
GUCCCCGGUAAGCGAACCAUUUGUCUGUGUAAAAGAAAUUCUUUGUGCCAUACCAACGAAGAUACGAGAUACAACAGGAACGGCAACGGCAGAGAAGAAUCGACGGACCGGGAACCAAAA
((.((((((..((((....(((.((((((((........(((((((.........))))))).......)))........((....))))))).)))..))).)..)))))).))..... ( -33.26)
>consensus
GUCCCCGGUAAGCGAACCAUUUGUCUGUGUAAAAGAAAUUCUUUGUGCCAUACCAACGAAGAUACGAGAUACAACAGGAACGGCAACGGCUGAGAAGAAUCGACGGACCGGGAACCAAAA
((.((((((..((((........((((((((........(((((((.........))))))).......))).)))))..((....))...........))).)..)))))).))..... (-30.34 = -30.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:11 2006