Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,686,775 – 1,686,887 |
Length | 112 |
Max. P | 0.771839 |
Location | 1,686,775 – 1,686,887 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -16.80 |
Energy contribution | -19.80 |
Covariance contribution | 3.00 |
Combinations/Pair | 1.15 |
Mean z-score | -1.89 |
Structure conservation index | 0.60 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1686775 112 + 22224390 AGCAUCGUUUACAGCCGAACAUAAGUGGCUCACGUGCUUUUUCAGUCGCACAGUGGAAUUAAUCCGCUUAACCCAUGCCUUUUAUUUUUGGCUGAAUACUGUACUUACCCA--------U .(((..((...((((((((.(((((.(((....((((..........))))((((((.....))))))........))).))))).))))))))...))))).........--------. ( -31.80) >DroSec_CAF1 26994 112 + 1 AGCAUCGUUUAAAGCCGAACAGAAGUGGCUCACGUGCUUUUUCAGUCGCACAGUGGAAUUAAUCCGCUGAACUCAUAACUUUUAUUUUUGGCUGAAAACUGUACUUACCCA--------U .(((..((((..(((((((..((((.(((......))).)))).......(((((((.....))))))).................)))))))..))))))).........--------. ( -28.40) >DroSim_CAF1 21068 100 + 1 AGCAUCGUUUACAGCCGAACAGAAGUGGCUCACGUGCUU-UUCAGUCGUACAGUGGAAUUAAUCCGCUGAACUCAUGACUUUUAUUUUUGGCUGAAAACUG------------------- ......((((.((((((((..((((.(((......))))-)))((((((.(((((((.....))))))).....))))))......)))))))).))))..------------------- ( -32.30) >DroEre_CAF1 22672 118 + 1 AGCAUCGUUCACAGCCGAACAGAAGUGGCUCACGUGCUUUUUCGGUCGCACAGUGGAUUAA-UCUCCAUAAAUCGAAACUUUUAUUA-CAGCUGAAAACUCUCCUUGGCAACAAGGCAAC .((...(((..((((.(((.((((((..(....((((..........)))).(((((....-..))))).....)..)))))).)).-).))))..)))....((((....))))))... ( -29.80) >DroYak_CAF1 20616 110 + 1 AGCAUCGUGCACAGCCGAACAGAAGUGGCUCACGUGCUUUUUCAGUCGCACAAUGGAAUAAGUCCCCAAAAAUCGAAACUUUUAUUA-AAGCUAAAAGCUCUCCUUACCAA--------- ((((.((((...(((((........))))))))))))).......(((.....(((.........))).....)))...........-.(((.....)))...........--------- ( -17.60) >consensus AGCAUCGUUUACAGCCGAACAGAAGUGGCUCACGUGCUUUUUCAGUCGCACAGUGGAAUUAAUCCGCUGAACUCAUAACUUUUAUUUUUGGCUGAAAACUGUACUUACCAA_________ ......((((.((((((((.((((((.......((((..........)))).(((((.....)))))..........))))))...)))))))).))))..................... (-16.80 = -19.80 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:20 2006