Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 277,665 – 277,775 |
Length | 110 |
Max. P | 0.544013 |
Location | 277,665 – 277,775 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 87.67 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -20.64 |
Energy contribution | -21.40 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.11 |
Mean z-score | -1.50 |
Structure conservation index | 0.77 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 277665 110 - 22224390 UUUAUUUGAAUCGCGGGAUCAUUGG----GUCCAAUCGCCCUUUAGGUGUCCUACAUUUUUUUGUUAUAAUCUUCAAGCUUGUCCUCUAUCUGAUGGACACUUUCGAUGCGAUA .........(((((.(((((....)----)))).(((((.....((((.....(((......)))....))))....)).(((((((.....)).))))).....)))))))). ( -26.20) >DroSec_CAF1 25097 109 - 1 UUUAUCUGAAUCGCGGGAUCAUUG-----GUCCAAUCGCCCUUCACGUGUCCUACAUUUGUUUGUUGCAAUCUUCAAGCUUGUCUUCUAUCUGAUGGACAAUUUCGAUGCGAUA ......((((..(((((((.....-----))))...)))..))))((((((........(((((..........)))))((((((((.....)).))))))....))))))... ( -23.70) >DroSim_CAF1 46475 109 - 1 UUUAUCUCAAAAGCGGGAUCAUUG-----GUCCAAUCGACCUUCACGUGUCCUACAUUUGUUUGUUGCAAUCUUCAAGCUUGUCUUCUAUCUGAUGGACACUUUCGAUGCGAUA .......((((.(..(((.(((.(-----(((.....)))).....))))))..).))))..(((((((.((...(((..(((((((.....)).))))))))..))))))))) ( -23.00) >DroEre_CAF1 25356 114 - 1 UUAAUCUGAAUCGCGGGAUCAUUGGUCCGGUCCAAUCGCUCUUCACGUGUCCCACAUUUGUUUGCUACAAUCUUCAAACUUGUCCUCUAUCUGAUGGACACUUUGGAUGCGAUA .........(((((.((((.....)))).((((((..((....((.(((.....))).))...))...............(((((((.....)).)))))..))))))))))). ( -29.30) >DroYak_CAF1 47305 114 - 1 UUAAACUGAAUCGCGGGAUCAUUGGUCCGGUCCAAUUGCUCUCCAUGUGUCCUACAUUUGUUUGCUACAAUCUUCAGACUUGUCUCCUAUCUGAUGGACACUUUGGAUGCGAUA .........((((((((...(((((......)))))..)))((((.((((((.....((((.....))))...(((((...........))))).))))))..)))).))))). ( -31.90) >consensus UUUAUCUGAAUCGCGGGAUCAUUGG____GUCCAAUCGCCCUUCACGUGUCCUACAUUUGUUUGUUACAAUCUUCAAGCUUGUCUUCUAUCUGAUGGACACUUUCGAUGCGAUA .........((((((((...(((((......)))))..))).....((((((.......(((((..........)))))..(((........))))))))).......))))). (-20.64 = -21.40 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:42 2006