Locus 6099

Sequence ID X_DroMel_CAF1
Location 15,640,012 – 15,640,132
Length 120
Max. P 0.958711
window9911

overview

Window 1

Location 15,640,012 – 15,640,132
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.49
Mean single sequence MFE -36.08
Consensus MFE -18.33
Energy contribution -21.49
Covariance contribution 3.16
Combinations/Pair 1.04
Mean z-score -2.07
Structure conservation index 0.51
SVM decision value 1.49
SVM RNA-class probability 0.958711
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15640012 120 - 22224390
AAAGCUGGAGAAGAUCUCUAUCUCGAAAUGGAGAGCUGUGCGGAUUGAUUGGGCUAUUCACAGCACCUUCUUCGGCGAACUUUUUUCGCGGACCUUGCAGGGAUCGAAGAAAUAAACCCA
...((((((((((.(((((((......)))))))((((((..(((.(......).)))))))))..))))))))))....((((((((.(..((.....))..)))))))))........ ( -37.90)
>DroSec_CAF1 4683 102 - 1
AAAGCUGGAGGAGAUCUCUAUCUCUGGAUGGAGUGCUGUGCGGAUU---UCGGGUAUUCACAGCACCUUCUUCGGCGAACUUUUC---------------GGAUCGAGGAAGUAAACCCA
...((((((((((...((((((....))))))((((((((...((.---....))...))))))))))))))))))..(((((((---------------(...))).)))))....... ( -35.90)
>DroSim_CAF1 4658 102 - 1
AAAGCUGGAGGAGAUCUCUAUCUGUGGAUGGAGUGCUGUGCGGAUU---UCGGGUCUUCACAGCACCUUCUUCGGCGAACUUUUC---------------GGAUCGCAGAGGUAAACACA
...((((((((((...((((((....))))))((((((((.((((.---....)))).))))))))))))))))))..(((((((---------------(...)).))))))....... ( -40.60)
>DroEre_CAF1 4296 104 - 1
AAAGCUGGAGAAG------AUCUCUUGAUGGAGUGCUA-----AUU-----GGGUAUUCACAGCACCUUCUUCGGGGGACUUUUUUCGUGGAGUUUGCAGGGAUCGAAGAAGGGAACACA
...(((((((...------..)))......(((((((.-----...-----.))))))).)))).((((((((((.(((((((......))))))).)......)))))))))....... ( -33.80)
>DroYak_CAF1 3996 108 - 1
AAAGCUGGCGAAGAUUAGGAUCUCUAGAUGGAGUGCUG-----AUUGC--UGGGCAUUCACAGCACCUUCUUGGGGGGACUUUUUUCGUUGACUUUGCAGGGAUCGAAGAAGAGA-----
((((..((((((((..((..(((((((..((.((((((-----..(((--...)))....))))))))..)))))))..)).))))))))..))))...................----- ( -32.20)
>consensus
AAAGCUGGAGAAGAUCUCUAUCUCUAGAUGGAGUGCUGUGCGGAUU___UCGGGUAUUCACAGCACCUUCUUCGGCGAACUUUUUUCG__GA__UUGCAGGGAUCGAAGAAGUAAACACA
...((((((((((...((((((....))))))((((((((..................))))))))))))))))))............................................ (-18.33 = -21.49 +   3.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:10 2006