| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,636,418 – 15,636,510 |
| Length | 92 |
| Max. P | 0.780335 |
| Location | 15,636,418 – 15,636,510 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.33 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -16.05 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15636418 92 + 22224390 -------------------AGAAACUUGAUCUUGAGUACUACGCACCGAUUUGAGUGCCUAGUGUCAUAGUGCUGAUUUCUUCACUGGUAUUUUGGUCGGCAUCCUCCUCU-- -------------------....((((......))))........(((((..(((((((.((((....(((....)))....)))))))))))..)))))...........-- ( -21.20) >DroPse_CAF1 17735 113 + 1 AUGUGCAGAGCCAUCAUGAUGGAUGCUAAUUUGAGAAUCUACUCACUGAUGGAAGUGCCCAAUGGCAUCGUACUAAUUUCCUCUCCUGUGUUUUCGUUGUCUUCGUCAUCUUC ..((((....((((((((((((((.((......)).))))).))).))))))..(((((....))))).))))........................................ ( -23.80) >DroSec_CAF1 1208 92 + 1 -------------------GGGAACUUGAUCUAAAGUACUACGCACCGAUUUGAGUGCCUAGUGUCAUGGUGCUGAUUUCUUCGCUGGUAUUUUGAUCGGUAUCGUCCUCU-- -------------------((((..((((((.(((((((((.((...((..(.((..((.........))..)).)..))...))))))))))))))))).....))))..-- ( -27.70) >DroSim_CAF1 1209 92 + 1 -------------------AGGAACUUGAUCUUAAGUACUACGUACCGAUUUGAGUGCCCAGUGUCAUGGUGCUGAUUUCUUCGCUGGUAUUUUGAUCGGUAUCAUCCUCU-- -------------------(((((((((....))))).....(((((((((.(((((((.((((....((........))..))))))))))).)))))))))..))))..-- ( -28.20) >DroEre_CAF1 1207 92 + 1 -------------------AGGAACUCGAUGGUAAGCUGUACGCACCGAUUUGAGUGCCUAGUGUCAUUGUGCUGAUUUCUUCGCUGGUAUUUUGAUCGGUAUCUUCCUCC-- -------------------(((((..((((((....)))).)).(((((((.(((((((.((((.....((....)).....))))))))))).)))))))...)))))..-- ( -25.70) >DroYak_CAF1 1153 91 + 1 -------------------GGGAACGCGGUGGUA-GUUCUACGCACCGAUUUGAGUGCCUAGUGUCAUGGUGCUAAUUUCUUCGCUGGUAUUUUGAUCGGUGUCUUCCUCC-- -------------------(((((....((((..-...))))(((((((((.(((((((.((((....(((....)))....))))))))))).))))))))).)))))..-- ( -32.70) >consensus ___________________AGGAACUUGAUCUUAAGUACUACGCACCGAUUUGAGUGCCUAGUGUCAUGGUGCUGAUUUCUUCGCUGGUAUUUUGAUCGGUAUCGUCCUCU__ ............................................(((((((.(((((((.((((....(((....)))....))))))))))).)))))))............ (-16.05 = -16.30 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:00 2006