Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,626,226 – 15,626,323 |
Length | 97 |
Max. P | 0.860232 |
Location | 15,626,226 – 15,626,323 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 69.69 |
Mean single sequence MFE | -38.78 |
Consensus MFE | -11.91 |
Energy contribution | -9.25 |
Covariance contribution | -2.66 |
Combinations/Pair | 1.71 |
Mean z-score | -2.20 |
Structure conservation index | 0.31 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.860232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15626226 97 - 22224390 CCAGUUUGUUGGCAAUGGAGGUGGACGCCUCAUCGCUGGCUCCAUAAUCGGCUGUGGUGAUGCGCUCCACCUCCUGGGAAUUGCCGAUGAAGGAUUC ((..((..((((((((((((((((((((.(((((((.((((........))))))))))).))).))))))))).....))))))))..)))).... ( -48.70) >DroVir_CAF1 3637 97 - 1 UGCGCUUAAUGGCAGCAGCGCUGACGCUCUCCUCCUCGCAUUCGCUGCUGGCUUCGGUGGCACGCAGUGCCUCCCGCGCAUUGCCAAUGAAUGAUUC (((((.....(.((((((((..((.((..........)).)))))))))).)...((.(((((...))))).)).)))))................. ( -34.40) >DroGri_CAF1 3765 97 - 1 UGCGCUUGAUGGCAGCAACGCUGACGCUUUCCUCAUCGCACUCGCUGCUUGCCUCUGUGGCACGCAGCGCCUCCCGCGCAUUGCCAAUGAACGAUUC (((((..((.(((.....((.(((........))).)).....(((((.((((.....)))).))))))))))..)))))................. ( -33.20) >DroEre_CAF1 1469 97 - 1 CCAGUUUGUUGGCAAUGGAGGUGGCCGCCUCAUCGCUGGCUCCAUAGUCGGCGUUGGUGAUGCGCUCCACCUCCUGGGAAUUGCCGAUAAAGGACUC ((..((((((((((((((((((((.(((.((((((((((((....))))))))...)))).)))..)))))))).....)))))))))))))).... ( -47.50) >DroYak_CAF1 1404 97 - 1 CCAGUUUGUUGGCAAUCGAGGUGGCCGCCUCAUCGCUGGAUCCGUAGUCGGCGGUUGUGAUGCGCUCCACCUCCUGGGAAUUGCCGAUGAAGGAUUC ((..((..((((((((((((((((.(((.((((.((((...(((....))))))).)))).)))..)))))))....).))))))))..)))).... ( -39.50) >DroMoj_CAF1 3425 97 - 1 UGCGCUUGAUGGCAGCUACGCUGACGGUCUCCUCCUCGCAUACGCUGUUCGCCUCGGUGGCACGCAGUGCCUCCCGCGCAUUCCCAAUGAACGAUUC (((((..((.((((((((.((.((.((......)))))).)).)))....)))))((.(((((...))))).)).)))))................. ( -29.40) >consensus CCAGCUUGAUGGCAACAGAGCUGACCGCCUCAUCGCCGCAUCCGCAGUCGGCCUCGGUGACACGCACCACCUCCCGCGAAUUGCCAAUGAAGGAUUC .........((((((...............................(((.((....))))).....(((.....)))...))))))........... (-11.91 = -9.25 + -2.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:59 2006