Locus 6092

Sequence ID X_DroMel_CAF1
Location 15,625,377 – 15,625,486
Length 109
Max. P 0.636723
window9897

overview

Window 7

Location 15,625,377 – 15,625,486
Length 109
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 81.33
Mean single sequence MFE -28.01
Consensus MFE -23.59
Energy contribution -23.42
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.32
Structure conservation index 0.84
SVM decision value 0.21
SVM RNA-class probability 0.636723
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15625377 109 + 22224390
--AAUGCGAAAAAU--UUCUAAUAGGCAUCCAAAACACCGUCACGAGAUGCCCUGGGAGUGGCCCUACUUUUCCGCUACUACAACACGCUGUAUUACGUGGAGCGUCGCUUCU
--...((((...((--(((((...(((((((.............).)))))).)))))))..........((((((((.((((......)))).)).))))))..)))).... ( -25.82)
>DroSec_CAF1 674 101 + 1
----------CAAU--UUCUAACAGGCAUCCAAAACACCGUCACGAGAUGCCCUGGGAGUGGCGCUACUUUUCCGCUACUACAACACGCUGUAUUACGUGGAGCGUCGCUUCU
----------....--......(((((((((.............).)))).))))((((((((((......(((((((.((((......)))).)).))))))))))))))). ( -31.82)
>DroSim_CAF1 462 109 + 1
--UAUGCGAACAAC--UUCUAAUAGGCAUCCAAAACACCGUCACGAGAUGCCCUGGGAGUGGCGCUACUUUUCCGCUACUACAACACGCUGUAUUACGUGGAGCGUCGCUUCU
--............--........(((((((.............).))))))..(((((((((((......(((((((.((((......)))).)).)))))))))))))))) ( -31.22)
>DroEre_CAF1 643 106 + 1
--UAUCC---CGGC--UCCUUAUAGGCAUCCAAAACACCGUCACGAGAUGCCCUCGGAGUGGCCCUGCUUUUCCGCUACUACAACACCCUGUAUUACGUGGAACGUCGCUUCU
--.....---.(((--..(((...(((((((.............).))))))....)))..)))..((..((((((((.((((......)))).)).))))))....)).... ( -27.02)
>DroWil_CAF1 1690 101 + 1
AUUG------------UUGUUGCAGGCUUCAAAGACUCCAUCACGCGAUGCUUUAGGAGUGGCAUUACUUUUCCGCUAUUACAAUUUGUUGUAUUAUGUGGAGCGUCGCUUCU
.(((------------(....))))...................(((((((....((((((....))))))(((((((.(((((....))))).)).)))))))))))).... ( -25.10)
>DroYak_CAF1 567 108 + 1
--UAAUC---CUUCUAUCCCAAUAGGCAUCCAAGACACCGUCACGAGAUGCCCUCGGCGUGGCCCUACUUUUCCGCUACUACAACACGCUGUAUUACGUGGAACGCCGCUUCU
--.....---..............(((((((..(((...)))..).))))))..(((((((......)...(((((((.((((......)))).)).)))))))))))..... ( -27.10)
>consensus
__UAU_C___CAAC__UUCUAAUAGGCAUCCAAAACACCGUCACGAGAUGCCCUGGGAGUGGCCCUACUUUUCCGCUACUACAACACGCUGUAUUACGUGGAGCGUCGCUUCU
........................((((((................))))))...((((((((.......((((((((.((((......)))).)).)))))).)))))))). (-23.59 = -23.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:58 2006