Locus 6090

Sequence ID X_DroMel_CAF1
Location 15,619,526 – 15,619,627
Length 101
Max. P 0.577256
window9893

overview

Window 3

Location 15,619,526 – 15,619,627
Length 101
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 90.25
Mean single sequence MFE -26.50
Consensus MFE -20.18
Energy contribution -20.30
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -2.25
Structure conservation index 0.76
SVM decision value 0.09
SVM RNA-class probability 0.577256
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15619526 101 + 22224390
CACUUGGCACAGCUGAAAAAGAUGUGGGAUACGUUAUCGAAAACGUUACACGGUCACAUAUGUUACUGUUUGUAACGUGCAUUUUAUUCAAA-----AUUGUCAAA
...((((((....((((.(((((((..((((...))))....((((((((((((.((....)).)))))..)))))))))))))).))))..-----..)))))). ( -27.10)
>DroSec_CAF1 1285 106 + 1
CACUUGGAACAGCUGAAUAAGAUGUGGGAUACGUUAGCGAAAACGUUCUAUGGUCACAUAUGUUAUCGUUUGUAACCUGCAUUUUAUUCAAAGUAUAAUUGUCAAA
.............(((((((((((..((.((((..(((((.(((((...(((....)))))))).))))))))).))..)))))))))))................ ( -29.80)
>DroSim_CAF1 1271 106 + 1
CACUUGGAACAGCUGAAUAAGAUGUGGGAUACGCUAGCGAAAACGUUAUACGGUCACAUAUGUUAUUGUUUGUAACGUGCAUUUUAUUCAAAGUAUUAUUGUCAAA
.............((((((((((((......((....))...((((((((((((.((....)).)))))..)))))))))))))))))))................ ( -22.60)
>consensus
CACUUGGAACAGCUGAAUAAGAUGUGGGAUACGUUAGCGAAAACGUUAUACGGUCACAUAUGUUAUUGUUUGUAACGUGCAUUUUAUUCAAAGUAU_AUUGUCAAA
.............((((((((((((......((....))...((((((((((((.((....)).)))))..)))))))))))))))))))................ (-20.18 = -20.30 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:54 2006