Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,684,515 – 1,684,629 |
Length | 114 |
Max. P | 0.836524 |
Location | 1,684,515 – 1,684,629 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.21 |
Mean single sequence MFE | -39.50 |
Consensus MFE | -28.31 |
Energy contribution | -30.75 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.01 |
Structure conservation index | 0.72 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.836524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1684515 114 - 22224390 CGUGUGCACUCUAAUCGGUCACAGAGAAGGAGAGUGC--GCGAUUUGCGGCAAGAGCGACGUCCCUGUGGUACGAGUA----UGCAUAUAUGUAUAGCACAUGCCGCUUAGCGAAAGUGA ..((((((((((..((.......)).....)))))))--)))....((((((.(.((..(((((....)).)))..((----((((....)))))))).).))))))...((....)).. ( -40.00) >DroSec_CAF1 24850 116 - 1 CGUGUGCACUCUAAUCGGUCACAGAGAAGGAGAGUGC--GCGAUUUGCGGCAA--GCGACGUCCGUGUGGUACGAGUAGACGUACAUAUAUGUAUAGCAAAUGCCGCUCAGCGAAAGUGA ..((((((((((..((.......)).....)))))))--)))....((((((.--((...((.(((((((((((......))))).)))))).)).))...))))))...((....)).. ( -40.60) >DroSim_CAF1 18677 118 - 1 CGUGUGCACUCUAAUGGGGCACAGAGAAGGAGAGUGC--GCGAUUUGCGGCAAGAGCGACGUCCGUGUGGUACGAGUAGACGUACAUAUAUGUAUAGCACAUGCCGCUCAGCGAAAGUGA ..((((((((((..((.....)).......)))))))--)))....((((((.(.((...((.(((((((((((......))))).)))))).)).)).).))))))...((....)).. ( -41.50) >DroYak_CAF1 18140 102 - 1 CGUGUGCACUUUAAUCGGUCACAGCGACAGAGAGUGUAUGCGAUUUGCGGCAAGAGCGACGUCCGUGUGGU------------------AUAUAUAGCACAUGCCGCUCAGCGAAAGUGA ((((((((((((.....(((.....)))..))))))))))))....((((((...(((.....)))(((.(------------------(....)).))).))))))...((....)).. ( -35.90) >consensus CGUGUGCACUCUAAUCGGUCACAGAGAAGGAGAGUGC__GCGAUUUGCGGCAAGAGCGACGUCCGUGUGGUACGAGUA____UACAUAUAUGUAUAGCACAUGCCGCUCAGCGAAAGUGA (((..(((((((..((.........))...)))))))..)))....((((((.(.((...((.(((((((((((......))))).)))))).)).)).).))))))...((....)).. (-28.31 = -30.75 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:19 2006