Locus 6089

Sequence ID X_DroMel_CAF1
Location 15,617,133 – 15,617,253
Length 120
Max. P 0.852799
window9892

overview

Window 2

Location 15,617,133 – 15,617,253
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.08
Mean single sequence MFE -38.51
Consensus MFE -35.18
Energy contribution -35.14
Covariance contribution -0.04
Combinations/Pair 1.08
Mean z-score -1.32
Structure conservation index 0.91
SVM decision value 0.80
SVM RNA-class probability 0.852799
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15617133 120 - 22224390
CUUCCAUGCCUACUUCAAGCAAACCCUUCAGGAGGUCUACCAUGCGCCCUAUCUGGUGCGCAAGGUUAAGAUCUACUACUAUCUGGAAGAUGGUACUUUAGAGAUCUACGAGCCCCGGGU
......(((.........))).((((....((.(((..(((.(((((((.....)).))))).)))..((((((..(((((((.....)))))))......))))))....))))))))) ( -36.50)
>DroSec_CAF1 5295 120 - 1
CUUCCAUGCCUACUUCAAGCAGACCCUUCAGGAGGUCUACCAUGCGCCCUAUCUGGUGCGCAAGGUCAAGAUCUACUACUAUCUGGAGGAUGGUACCUUGGAGAUCUACGAGCCCCGGGU
.......((((.......(.(((..((((((((((((((((.(((((((.....)).))))).)))..))))))..(((((((.....))))))).))))))).))).).......)))) ( -40.14)
>DroSim_CAF1 5302 120 - 1
CUUCCAUGCGUACUUCAAGCAGACCCUUCAGGAGGUCUACCAUGCGCCCUAUCUGGUGCGCAAGGUCAAGAUCUACUACUAUCUGGAGGAUGGUACCUUGGAGAUCUACGAGCCCCGGGU
..(((...(((((((((((...(((((((((((((((((((.(((((((.....)).))))).)))..)))))).......)))))))...)))..)))))))...))))......))). ( -40.51)
>DroEre_CAF1 5507 120 - 1
CUUCAAUGCCUACUUCAAGCAAACCCUCCAGGAGGUCUACCAUGCGCCCUACCUGGUGCGCAAGGUCAAGAUCUACUACUAUCUUGAGGAUGGUACCUUGGAGAUCUACGAGCCCCGGGU
......(((.........))).(((((((((((((((((((.(((((((.....)).))))).)))..))))))..(((((((.....))))))).))))))).....((.....))))) ( -40.70)
>DroYak_CAF1 4980 120 - 1
CUUCUAUGCCUACUUCAAGCAGACCCUCCAGGAGGUCUACCAUGCGCCGUACCUGGUGCGCAAGGUCAAGAUUUACUACUAUCUGGAGGAUGGCACUUUGGAGAUCUACGAACCACGGGU
.......(((..((((((((....(((((((((((((((((.((((((.......).))))).)))..)))))).......))))))))...))...)))))).....((.....))))) ( -34.71)
>consensus
CUUCCAUGCCUACUUCAAGCAGACCCUUCAGGAGGUCUACCAUGCGCCCUAUCUGGUGCGCAAGGUCAAGAUCUACUACUAUCUGGAGGAUGGUACCUUGGAGAUCUACGAGCCCCGGGU
......(((.........))).(((((((((((((((((((.(((((((.....)).))))).)))..))))))..(((((((.....))))))).))))))).....((.....))))) (-35.18 = -35.14 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:53 2006