Locus 6087

Sequence ID	X_DroMel_CAF1
Location	15,615,741 – 15,615,901
Length	160
Max. P	0.975812

overview

Window 7

Location	15,615,741 – 15,615,861
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	95.00
Mean single sequence MFE	-36.62
Consensus MFE	-33.32
Energy contribution	-33.04
Covariance contribution	-0.28
Combinations/Pair	1.15
Mean z-score	-1.63
Structure conservation index	0.91
SVM decision value	1.76
SVM RNA-class probability	0.975812
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15615741 120 - 22224390
CUACUGCGUGGAUCCGCUGAACACUGGAAACAAGGAGAUUCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGAUAAACGUGUAUGGCCGUGCGGUGGUGAUAACCGAACUGGA
.(((.((((..((((((((.....((....)).((((((((.((.((....)).)).)))))))).......))))).)))..)))))))...((((.((((.......)))).)).)). ( -37.30)
>DroSec_CAF1 4142 120 - 1
CUAUUGCGUGGAUCCGCUGAACACCGGAAACAAGGAGAUCCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGAUAAACGUGUAUGGCCGUGCGGUGGUGAUAACCGAACUGGA
(((((((((..((((((((....(((....)..((((((((.((.((....)).)).)))))))).....))))))).)))..))))).))))((((.((((.......)))).)).)). ( -40.50)
>DroSim_CAF1 4126 120 - 1
CUAUUGCGUGGAUCCGCUGAACACCGGAAACAAGGAGAUCCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGAUAAACGUGUAUGGCCGUGCGGUGGUGAUAACCGAACUGGA
(((((((((..((((((((....(((....)..((((((((.((.((....)).)).)))))))).....))))))).)))..))))).))))((((.((((.......)))).)).)). ( -40.50)
>DroEre_CAF1 4241 120 - 1
CUACUGCGUGGAUCCACUGAACACCGGAAACAAGGAUAUCCAUUACUACAGGGAAAAGGAUCUGCAGAUAGGCAGUGUGAUAAACGUUUAUGGUCGUGCGGUGGUGAUAACCGAACUGGA
((((((((..(((((.(((......(....)..((....)).......)))......)))))..)..((((((.((.......))))))))......)))))))......((.....)). ( -29.90)
>DroYak_CAF1 4162 120 - 1
CUACUGCGUCGAUCCGUUGAACACCGGAAACAAGGAGAUCCAUUACUAUAAGGAAAAGGAUCUGCAGAUAGGCAGUGUGAUAAACGCUUAUGGUCGUGCGGUGGUGAUAACCGAACUGGA
((((((((.(((((((((..((((.(....)..(.((((((.((.((....)).)).)))))).).........))))....)))).....)))))))))))))......((.....)). ( -34.90)
>consensus
CUACUGCGUGGAUCCGCUGAACACCGGAAACAAGGAGAUCCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGAUAAACGUGUAUGGCCGUGCGGUGGUGAUAACCGAACUGGA
.....((((..((((((((......(....)..((((((((.((.((....)).)).)))))))).......))))).)))..))))......((((.((((.......)))).)).)). (-33.32 = -33.04 +  -0.28)

alignment

secondary structure

dotplot

Window 8

Location	15,615,781 – 15,615,901
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	93.50
Mean single sequence MFE	-37.12
Consensus MFE	-30.82
Energy contribution	-31.06
Covariance contribution	0.24
Combinations/Pair	1.11
Mean z-score	-1.29
Structure conservation index	0.83
SVM decision value	-0.02
SVM RNA-class probability	0.524445
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15615781 120 - 22224390
CGCUACUGAACGUCCUGGGCACCAACAUGCGCAACGUGCGCUACUGCGUGGAUCCGCUGAACACUGGAAACAAGGAGAUUCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGA
(((.((((...((((((.(((......))).))....((((....))))))))((.((......((....)).((((((((.((.((....)).)).))))))))))...))))))))). ( -34.90)
>DroSec_CAF1 4182 120 - 1
CGCUACUGAACGUCCUGGGCACCAAUAUGCGCAACGUGCGCUAUUGCGUGGAUCCGCUGAACACCGGAAACAAGGAGAUCCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGA
(((.((((...(((((((.((((((((.((((.....))))))))).)))..((....))...))))......((((((((.((.((....)).)).)))))))).)))...))))))). ( -41.00)
>DroSim_CAF1 4166 120 - 1
CGCUACUGAACGUCCUGGGCACCAAUAUGCGCAACGUGCGCUAUUGCGUGGAUCCGCUGAACACCGGAAACAAGGAGAUCCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGA
(((.((((...(((((((.((((((((.((((.....))))))))).)))..((....))...))))......((((((((.((.((....)).)).)))))))).)))...))))))). ( -41.00)
>DroEre_CAF1 4281 120 - 1
CGCUACUUAAUGUCCUGGGCACCAACAUGCGCAACGUACGCUACUGCGUGGAUCCACUGAACACCGGAAACAAGGAUAUCCAUUACUACAGGGAAAAGGAUCUGCAGAUAGGCAGUGUGA
(((........((((((.(((......))).)....(((((....)))))..(((.(((......(....)..((....)).......))))))..)))))((((......)))).))). ( -30.40)
>DroYak_CAF1 4202 120 - 1
CGCUGCUGAAUGUGUUGGGCACCAACAUGCGCAACGUACGCUACUGCGUCGAUCCGUUGAACACCGGAAACAAGGAGAUCCAUUACUAUAAGGAAAAGGAUCUGCAGAUAGGCAGUGUGA
(((((((...(((((((.(((......))).))))(.((((....)))))..((((........)))).))).(.((((((.((.((....)).)).)))))).).....)))))))... ( -38.30)
>consensus
CGCUACUGAACGUCCUGGGCACCAACAUGCGCAACGUGCGCUACUGCGUGGAUCCGCUGAACACCGGAAACAAGGAGAUCCAUUACUAUAGGGAAAAGGAUCUCCAGAUAGGCAGUGUGA
.........((((..((.(((......))).)))))).(((.(((((.((..((((........))))..)).((((((((.((.((....)).)).))))))))......)))))))). (-30.82 = -31.06 +   0.24)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:49 2006