Locus 6085

Sequence ID X_DroMel_CAF1
Location 15,615,101 – 15,615,221
Length 120
Max. P 0.564863
window9885

overview

Window 5

Location 15,615,101 – 15,615,221
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.08
Mean single sequence MFE -33.69
Consensus MFE -25.91
Energy contribution -26.47
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.57
Structure conservation index 0.77
SVM decision value 0.06
SVM RNA-class probability 0.564863
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15615101 120 + 22224390
ACAGUCCGGAACACACGAUCCCACAAACUCCGCCAUGCGAUUCUGCAGGGCACUCUUCACCUUCUCCAUGAUCACACCCACAUUCGCAUGGGGAAAGAUCUCCGGAUGGUGCUCCAUGUA
((((((((((......((((...........(((.((((....)))).)))..........(((((((((................))))))))).)))))))))))((....)).))). ( -34.09)
>DroSec_CAF1 3502 120 + 1
ACAGUCCGGAACACACGAUCCCACAAACUCCGCCAUGCGAUUCUGCAGGGCACUCUUCACCUUCUCCAUGAUCACACCCACAUUUGCGUGGGGAAAGGUCUCCGGAUGGUGCUCCAUGUA
.......(((...(((.((((..........(((.((((....)))).))).......((((((((((((................))))))).)))))....)))).))).)))..... ( -35.39)
>DroSim_CAF1 3486 120 + 1
ACAGUCCGGAACGCACGAUCCCACAAACUCCGCCAUGCGAUUCUGCAGGGCACUCUUCACCUUCUCCAUGAUCACACCCACAUUUGCAUGGGGAAAGGUGUCCGGAUGGUGCUCCAUGUA
.......(((..((((.((((..........(((.((((....)))).)))......(((((((((((((................))))))).))))))...)))).)))))))..... ( -42.19)
>DroEre_CAF1 3601 120 + 1
ACAAUCCGGAACACACGAUCCCACAAACUCCGUCAUGUGAUUCUGCAGGGCAACUUUCACCUUUUCCAUAAUGACACCCACAUUUGCAUGGGUAAAGCUCUCCUGAUGGUGCUCCAUGUA
.......(((...(((.(((...........((((((((....((.(((....))).)).......))).)))))(((((........)))))...........))).))).)))..... ( -23.90)
>DroYak_CAF1 3522 120 + 1
ACAAUCCGGCACACACGAUCCCACAAACUCCGCCAUGCGAUUCUGCAGGGCACUCUUCACCUUCUCCAUGAUGAGGCCCACAUUGGCAUGGGUGAAGCUCUCCUGAUGGUGCUCCAUGUA
(((....(((((.((.((.............(((.((((....)))).)))...((((((((.(((......)))(((......)))..))))))))...)).))...)))))...))). ( -32.90)
>consensus
ACAGUCCGGAACACACGAUCCCACAAACUCCGCCAUGCGAUUCUGCAGGGCACUCUUCACCUUCUCCAUGAUCACACCCACAUUUGCAUGGGGAAAGCUCUCCGGAUGGUGCUCCAUGUA
.......(((...(((.((((..........(((.((((....)))).)))..........(((((((((................)))))))))........)))).))).)))..... (-25.91 = -26.47 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:46 2006