Locus 6082

Sequence ID X_DroMel_CAF1
Location 15,611,576 – 15,611,693
Length 117
Max. P 0.791137
window9877

overview

Window 7

Location 15,611,576 – 15,611,693
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.09
Mean single sequence MFE -39.60
Consensus MFE -24.56
Energy contribution -24.57
Covariance contribution 0.01
Combinations/Pair 1.48
Mean z-score -1.79
Structure conservation index 0.62
SVM decision value 0.59
SVM RNA-class probability 0.791137
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15611576 117 + 22224390
GCCAAUGGAACUGGAAAAAGUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCUAGUUCGGGACGGAUAAUCAGCUCCAAGACGGUUCCAUUCAAGUCGAAGGAUUUGGAUUCC
.....(((((((((((...(((((.((((((.((....))))))))....)))))....)))((..(.(.....).)..))....))))))))((((((((....)))))))).... ( -38.00)
>DroVir_CAF1 19192 117 + 1
GUGAACGGUUCCGGUAAAACGGUGCUGAUCAAGACGAUUCUGGGCGCCUAUCCCCCCAGCGCGGGCAGCAUAAGCAGCUUUGGGAAGUACUCGUAUCAGUACAGUGAGCACGAUAAC
.....((((((((......))((((((((....((((..(((((.......)))(((((.((..((.......)).)).))))).))...))))))))))))...)))).))..... ( -33.00)
>DroSec_CAF1 25 117 + 1
GCCAAUGGAACUGGGAAAAGUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCCAGUUCGGGACGGAUAAUCAGCUCCAAGAGGGUUCCAUACAAGUCGAAGGACUUGGAAUCC
.((....((((((((....(((((.((((((.((....))))))))..))))).)))))))).))..(((........)))....((((((((....((((....)))))))))))) ( -44.00)
>DroSim_CAF1 16 117 + 1
GCCAAUGGAACUGGGAAAAGUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCCAGUUCGGGACGGAUAAUCAGCUCCAAGAGGGUUCCAUACAAGUCGAAGGACUUGGAAUCC
.((....((((((((....(((((.((((((.((....))))))))..))))).)))))))).))..(((........)))....((((((((....((((....)))))))))))) ( -44.00)
>DroEre_CAF1 26 117 + 1
GCCAACGGAACCGGGAAAACUGUGCUGUUGAAGGCGAUCCUCGGAAUUUACACUCCCAGUUCGGGACGCAUAAUCACCUCCAACAAGGUGCCAUUCAAGUCGGAAGGCUCGGAAGCC
..((((((...(((.....)))..))))))..(((..(((..((.........((((.....))))........(((((......))))))).....((((....)))).))).))) ( -34.50)
>DroYak_CAF1 25 117 + 1
GCCAAUGGAACUGGGAAAACUGUGCUGCUGAAGGCGAUUCUCGGUAUAUACACGCCCAGUUCGGGACGCAUAAUCACCUCCAACAGGGUGCCAUUCAAGUCGAAGGGCUUGGAUGCC
((...(.((((((((.....(((((((..(((.....))).)))))))......)))))))).)...)).....(((((......))))).((((((((((....)))))))))).. ( -44.10)
>consensus
GCCAAUGGAACUGGGAAAACUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCCAGUUCGGGACGCAUAAUCAGCUCCAAGAGGGUUCCAUACAAGUCGAAGGACUUGGAAUCC
.......((((((((.....((((.((((((.((....))))))))..))))..))))))))(((((....................)))))...((((((....))))))...... (-24.56 = -24.57 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:38 2006