Locus 6077

Sequence ID X_DroMel_CAF1
Location 15,605,392 – 15,605,512
Length 120
Max. P 0.707451
window9865

overview

Window 5

Location 15,605,392 – 15,605,512
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.42
Mean single sequence MFE -33.07
Consensus MFE -25.10
Energy contribution -26.82
Covariance contribution 1.72
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.76
SVM decision value 0.37
SVM RNA-class probability 0.707451
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15605392 120 - 22224390
GAUGGAGAUGCUUCGACCCAAGCCAAUGGAAUGCCCUCACGUUGGCUAACACGUAGUGUUGAGUCAGAGAAUCUCACACUAAGGUAUUUUAAAAAUGCCUCAUGACCACCACUCAUCACA
(((((((((.((..(((.(.((((((((((......)).))))))))(((((...)))))).)))..)).))))).((...(((((((.....)))))))..)).........))))... ( -36.40)
>DroSec_CAF1 3469 120 - 1
GAGGGAGAUGCUUCGACCCAAGCCAAUGGAAUGCCCUCACGUUGGCUGACACUUAGUGUUGAGUCAGAGAAUCUCACAUUUAGGUACUUUAAAAAUGCCUCAUGACCACCACUCAUCACA
(((.(((((.((..(((.(.((((((((((......)).))))))))(((((...)))))).)))..)).))))).(((..(((((.........))))).))).......)))...... ( -34.20)
>DroSim_CAF1 3433 120 - 1
GAGGGAGAUGCUUCGACCCAAGCCAAUGGAAUGCCCUCACGUUGGCUAACACUUAGUGUUGAGUCAGAGAAUCUCACAUUUAGGUAUUUUAAAAAUGCCUCAUGACCACCACUCAUCACA
(((.(((((.((..(((.(.((((((((((......)).))))))))(((((...)))))).)))..)).))))).(((..(((((((.....))))))).))).......)))...... ( -36.80)
>DroEre_CAF1 3473 120 - 1
GAGGGAGCUGCUUCGACCCAAGCCAACGGAACGCCCUCUCGUUGGCUAACACGUAGUGUUGAGUCUGCGAAUCUUACGUUUAGAUAUUUUAAAAAUGCCUCAUGACCACCACUCAUCACA
((((((..(((...(((.(.((((((((((......)).))))))))(((((...)))))).))).)))..))...(((((...........)))))))))................... ( -28.20)
>DroYak_CAF1 3485 120 - 1
GUGGGCGAUGCUUCGACCCAAGCCAAUGGAAUGCCCUCUCGUUGGCUAACACGUAGUGUUGAGUUUGCAAAACUCACGUUCAGAUAUUUUAAAAACGCCUCAUGACCACCGCUCAUCACA
.(((((((....))).))))((((((((((......)).))))))))........(((.(((((............((((.............)))).............))))).))). ( -29.73)
>consensus
GAGGGAGAUGCUUCGACCCAAGCCAAUGGAAUGCCCUCACGUUGGCUAACACGUAGUGUUGAGUCAGAGAAUCUCACAUUUAGGUAUUUUAAAAAUGCCUCAUGACCACCACUCAUCACA
(((.(((((.(((.(((.(.((((((((((......)).))))))))(((((...)))))).))).))).))))).(((..(((((((.....))))))).))).......)))...... (-25.10 = -26.82 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:27 2006