Locus 6075

Sequence ID X_DroMel_CAF1
Location 15,602,515 – 15,602,635
Length 120
Max. P 0.649243
window9862

overview

Window 2

Location 15,602,515 – 15,602,635
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -43.93
Consensus MFE -29.04
Energy contribution -28.93
Covariance contribution -0.11
Combinations/Pair 1.36
Mean z-score -1.40
Structure conservation index 0.66
SVM decision value 0.24
SVM RNA-class probability 0.649243
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15602515 120 - 22224390
CCAACUCUGCAUUUAUGGUCGACGUUCGCGUGGCUUCCACACGAACCACAAUGCGCGAUUGGCUGGCAACAACCUCCACCUGCGUCGGCUUGACGCGCAUGCGCGACUUCAGAAUGCUAA
........((((((..(((((.((((((.((((...)))).)))))....(((((((...(((((((................)))))))...)))))))..))))))...))))))... ( -45.19)
>DroVir_CAF1 172 120 - 1
CCAGUUCCGCAUUGAUGGUGGCAUUGCGUGUCGCCUCGACGCGCACCAUGAUGCGCGACUUCUUGGGCACGGCGUGCAGCUGGCCGGGCUUGAUGCGCAGCCGCGACUUCAGAAUGCUGC
........((((((((.(((((..((((((((((((...((((((......))))))........(((.((((.....)))))))))))..))))))))))))).)..)))..))))... ( -49.90)
>DroSim_CAF1 526 120 - 1
CCAACUCUGCAUUUAUGGUCGACGUUCGCGUGGCUUCCACACGAACCACAAUGCGCGAUUGGCUGGCCACAGUCUCCACCUGCGUCGGCUUGACGCGCAUACGCGACUUCAGGAUGCUGA
.....((.((((((..(((((.((((((.((((...)))).)))))....(((((((...(((((((..(((.......))).)))))))...)))))))..))))))...)))))).)) ( -47.80)
>DroEre_CAF1 526 120 - 1
CCAGCUCUGCAUUUAUGGUCGACGUCCGAGUGGCUUCCACCCGAACCACGAUGCGCGAAUGGCUGGCCACAGCCUCCACUUGCGUCGGCUUGACGCGCAUGCGCGACUUUAGUAUGCUGA
.((((..(((......(((((.(((....((((.(((.....))))))).(((((((...(((((((((.((......)))).)))))))...)))))))))))))))...))).)))). ( -44.30)
>DroWil_CAF1 526 120 - 1
AGAGUUCCGCAUUGAUGGUGGCUGUUCGUGUUGCCUCCACACGCACAAUGAUGCGCGAACUCUUGGAGGCCACCUCCACCUGAUUCGGCUUGAUGCGCAAACGUGACUUCAAUAUGCUGG
((((((((((((((.(((.(((..........))).))))).........))))).)))))))((((((...)))))).......((((((((..(((....)))...))))...)))). ( -39.10)
>DroYak_CAF1 526 120 - 1
CCAACUCUGCAUUUAUGGUCGACGUUCGCGUGGCUUCCACCCGAACCACAAUGCGCGAAUGCUUGACAACAGCCUCCACUUGCGUUGGCUUGACGCGCAUGCGCGACUUCAGUAUGCUGA
.....((.((((....(((((.((((((.((((...)))).)))))....(((((((...((....((((.((........))))))))....)))))))..)))))).....)))).)) ( -37.30)
>consensus
CCAACUCUGCAUUUAUGGUCGACGUUCGCGUGGCUUCCACACGAACCACAAUGCGCGAAUGCCUGGCCACAGCCUCCACCUGCGUCGGCUUGACGCGCAUGCGCGACUUCAGUAUGCUGA
........((((....(((((..(((((.((((...)))).)))))....(((((((.....(((((..(((.......))).))))).....)))))))...))))).....))))... (-29.04 = -28.93 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:24 2006