Locus 6073

Sequence ID X_DroMel_CAF1
Location 15,594,336 – 15,594,451
Length 115
Max. P 0.703215
window9860

overview

Window 0

Location 15,594,336 – 15,594,451
Length 115
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 98.70
Mean single sequence MFE -27.80
Consensus MFE -26.80
Energy contribution -27.04
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.96
SVM decision value 0.36
SVM RNA-class probability 0.703215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15594336 115 + 22224390
CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU-GUAUGAGUAAUUUCCCAAUAUCUAAUGUUGCUC
.....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.(((((((-((..(((....)))...))).)))))))))))) ( -27.90)
>DroSec_CAF1 4562 115 + 1
CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU-GUAUGAGUAAUUUCCCAAUAUCUAAUGUCGCUC
.....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((..((((((((-((..(((....)))...))).))))))).)))) ( -26.00)
>DroEre_CAF1 4489 115 + 1
CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU-GUAUGAGUAAUUUCCCAAUAUCUAAUGUUGCUC
.....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.(((((((-((..(((....)))...))).)))))))))))) ( -27.90)
>DroYak_CAF1 4702 116 + 1
CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGUGGUAUGAGUAAUUUCCCAACAUCUAAUGUUGCUC
.....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.((((((((....(((....)))....)).)))))))))))) ( -29.40)
>consensus
CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU_GUAUGAGUAAUUUCCCAAUAUCUAAUGUUGCUC
.....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.((((((......(((....))).......)))))))))))) (-26.80 = -27.04 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:22 2006