| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,593,795 – 15,593,894 |
| Length | 99 |
| Max. P | 0.883140 |
| Location | 15,593,795 – 15,593,894 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 93.27 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -16.36 |
| Energy contribution | -16.74 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15593795 99 - 22224390 GUAAAGUGCGCAUAUGAGUUAUUUAUCAGUAAGCGAACAUAAACUAAAGUUAUUUUUAAAUAACAAAUGUACACAACAUACAAAUACAGGCGGUGCACA .....((((((...((.((((((((..(((((.(..............))))))..))))))))..((((.....)))).......))....)))))). ( -18.94) >DroSec_CAF1 4023 99 - 1 GUAAAGUGCGCAUAUGAGUUAUUUAUCAGUAAGCGAACAUAAACUAAAGUUAUUUUUAAAUAACAAAUGUACACAACAUGCAAAUACAGGCGGUGCACA .....((((((((((..((((((((..(((((.(..............))))))..))))))))..))))........(((........))))))))). ( -19.64) >DroEre_CAF1 3948 98 - 1 GUAAAGUGUACAAAUAAGUUAUUUAUCAUUA-GCGAAAAUAAACUAAAGUUAUUUUUAAAUAACAAAUGUGCACAACAUACGAGUACAGGCGGUGCACA .....((((((......((((((((....((-((..............))))....))))))))...(((((.(.......).)))))....)))))). ( -20.54) >DroYak_CAF1 4159 99 - 1 GUAAAGUGUGCAAAUGAGUUAUUUAUCAUUAGGCGAACAUAAACUAAAGUUAUUUUUAAAUAACAAAUGUACACAACAUGCAAGUACAGGCGGUGCACA .....((((((((((((........)))))..................((((((....))))))...)))))))....((((.((....))..)))).. ( -19.70) >consensus GUAAAGUGCGCAAAUGAGUUAUUUAUCAGUAAGCGAACAUAAACUAAAGUUAUUUUUAAAUAACAAAUGUACACAACAUACAAAUACAGGCGGUGCACA .....((((((......((((((((..((((.((..............))))))..))))))))...(((((...........)))))....)))))). (-16.36 = -16.74 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:21 2006