Locus 6071

Sequence ID X_DroMel_CAF1
Location 15,592,902 – 15,593,012
Length 110
Max. P 0.500000
window9858

overview

Window 8

Location 15,592,902 – 15,593,012
Length 110
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 91.26
Mean single sequence MFE -20.78
Consensus MFE -17.17
Energy contribution -16.80
Covariance contribution -0.37
Combinations/Pair 1.13
Mean z-score -1.39
Structure conservation index 0.83
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15592902 110 + 22224390
UUCCUAUUACAGUGAAACCAGCCACAGGCUGAUAAGUCGUCGCCAUUACAUAAAUGCAAAACCGACUUUGCAAUUGAAAAUCAUGUUCAAUAAAAAUUGCGAAAGUC-----AGC
...........(((........)))..((((((......((((.(((.......((((((......))))))((((((.......))))))...))).))))..)))-----))) ( -21.30)
>DroSec_CAF1 3143 107 + 1
UUCCUAUCACAGUGAAACCAGCCACAGGCUGAUAAGUCGUCGCCAUUACAUAAAUGCAAAACCGACUUGGCAAUUGAAAAUCAUGUUCAAUAAAAAUUGCGAAAGCG--------
...........((.....(((((...))))).(((((((....((((.....))))......))))))))).((((((.......)))))).......((....)).-------- ( -21.10)
>DroEre_CAF1 3159 115 + 1
UUCCUAUUACAAUGAAACCAGCCACAAGCUGAUAAGUCGUCGCCAUUACAUAAAUGCAAAACCGACUUUGCAAUUGGAAAUCAUGUUCGAUAAAAAUUGCGAAAGUCUUGGAAAA
((((.......((((...((((.....)))).....)))).((.(((.....)))))......((((((((((((....(((......)))...)))))).))))))..)))).. ( -22.20)
>DroYak_CAF1 3281 110 + 1
UUCCUAUCACAAUGAAACCAGCCACAAGCUGAUAAGUCGUCGUCAUUACAUAAAUGCAAAACCGACUUUGCAAUUGGAAAUCAUGUUCAAUAAAAAUUGCGAAAGUC-----AAA
........((.((((...((((.....)))).....)))).))....................((((((((((((.(((......)))......)))))).))))))-----... ( -18.50)
>consensus
UUCCUAUCACAAUGAAACCAGCCACAAGCUGAUAAGUCGUCGCCAUUACAUAAAUGCAAAACCGACUUUGCAAUUGAAAAUCAUGUUCAAUAAAAAUUGCGAAAGUC_____AAA
..................((((.....))))........((((.(((.......((((((......))))))((((((.......))))))...))).))))............. (-17.17 = -16.80 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:20 2006