Locus 6070

Sequence ID X_DroMel_CAF1
Location 15,591,893 – 15,591,992
Length 99
Max. P 0.535599
window9857

overview

Window 7

Location 15,591,893 – 15,591,992
Length 99
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 78.97
Mean single sequence MFE -26.77
Consensus MFE -23.47
Energy contribution -23.05
Covariance contribution -0.42
Combinations/Pair 1.29
Mean z-score -0.93
Structure conservation index 0.88
SVM decision value 0.00
SVM RNA-class probability 0.535599
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15591893 99 - 22224390
AUUAAAAGCAAACGCAAA--------------CAUCAUGGGCGGCGGCAAAAAUGUACGCCGCGGCUUGGAGCCUCUGGAGUUCGAAGAAUGCAUCGUCGACAGUCCGGACUU
.......((....))...--------------........(((((((((....))).))))))(((.....)))((((((.(((((.((.....)).)))).).))))))... ( -31.50)
>DroGri_CAF1 36882 99 - 1
AUCAAAAACAAAAACAAG--------------AAAAAUGGGCGGCGGCAAAGAUAUUCGCCGCGGCCUGGAGCCAUUAGAAUUUGAGGAAUGCAUCGUCGAUAGUCCCGAAUU
..................--------------......((((.(((((.((....)).))))).))))...........((((((.(((...(......)....))))))))) ( -24.00)
>DroSec_CAF1 2118 99 - 1
AUUAAAAGCAAACGCAAA--------------CAUCAUGGGCGGCGGCAAAAAUGUACGCCGCGGCUUGGAGCCUCUGGAGUUCGAAGAAUGCAUCGUCGACAGUCCGGACUU
.......((....))...--------------........(((((((((....))).))))))(((.....)))((((((.(((((.((.....)).)))).).))))))... ( -31.50)
>DroWil_CAF1 36055 97 - 1
--CAACAACAAAAUCACA--------------CAAAAUGGGCGGCGGCAAAGAUAUACGUCGCGGCCUGGAGCCAUUGGAAUUUGAGGAAUGCAUUGUCGAUAGUCCAGAAUU
--................--------------......((((.(((((..........))))).)))).......(((((..((((.((.....)).))))...))))).... ( -24.00)
>DroYak_CAF1 2261 99 - 1
AUUGAAAGCAAAAGCAAA--------------CAUCAUGGGCGGCGGCAAAAAUGUACGCCGCGGCUUGGAGCCUCUGGAGUUCGAAGAAUGCAUCGUCGACAGUCCGGACUU
.......((....))...--------------........(((((((((....))).))))))(((.....)))((((((.(((((.((.....)).)))).).))))))... ( -31.50)
>DroPer_CAF1 48691 113 - 1
AGAGAAAACAGAUACAAAAUACGAAAACCACUGAAAAUGGGUGGAGGAAAGGAUAUACGUCGCGGCUUGGAGCCUUUGGAAUUUGAAGAAUGCAUUGUCGAUAGUCCAGAGUU
..........(((..............(((((.......)))))......(......))))..(((.....)))((((((..((((.((.....)).))))...))))))... ( -18.10)
>consensus
AUUAAAAACAAAAGCAAA______________CAAAAUGGGCGGCGGCAAAAAUAUACGCCGCGGCUUGGAGCCUCUGGAAUUCGAAGAAUGCAUCGUCGACAGUCCGGACUU
........................................((((((...........))))))(((.....)))((((((..((((.((.....)).))))...))))))... (-23.47 = -23.05 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:19 2006