Locus 6069

Sequence ID X_DroMel_CAF1
Location 15,585,695 – 15,585,807
Length 112
Max. P 0.517697
window9856

overview

Window 6

Location 15,585,695 – 15,585,807
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 98.21
Mean single sequence MFE -23.15
Consensus MFE -21.25
Energy contribution -21.25
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.92
SVM decision value -0.03
SVM RNA-class probability 0.517697
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15585695 112 + 22224390
UAUAUGGCAGACUUCAGUUUAAAGUUUACAUUUUAAAAGUGAGCGAAGCACUGCUAUUUAUUUUUAUACAUUUGUAUAUGUAGUAGAUAUUAGAUACGUUGUAAUCCAUUUU
..((..((........((((...((((((.........)))))).)))).(((.((((((((..(((((....)))))...)))))))).)))....))..))......... ( -22.10)
>DroSec_CAF1 1729 112 + 1
UAUAUGGCAGACUUCAGUUUAAUGUUUACAUUUUAAAAGUGAGCGAAGCACUGCUAUUUAUUUUUAUACAUUUGUAUAUGUAGUAGAUAUUAGAUACGUGGUAAUCCAUUUU
...((((...(((...(((((((((((((....((((((((((((......))))...))))))))(((((......))))))))))))))))))....)))...))))... ( -25.10)
>DroEre_CAF1 2240 112 + 1
UAUAUGGCAGACUUCAGUUUAAAGUUUACAUUUUAAAAGUGAGCGAAGCACUGCUAUUUAUUUUUAUACAUUUGUAUAUGUAGUAGAUAUUAGAUAAGAUGUAAUCCAUUUU
...((((...((.((.((((...((((((.........)))))).)))).(((.((((((((..(((((....)))))...)))))))).)))....)).))...))))... ( -23.30)
>DroYak_CAF1 1813 112 + 1
UAUAUGGCAGACUUCAGUUUAAAGUUUACAUUUUAAAAGUGAGCGAAGCACUGCUAUUUAUUUUUAUACAUUUGUAUAUGUAGUAGAUAUUAGAUACGUUGUAAUCCAUUUU
..((..((........((((...((((((.........)))))).)))).(((.((((((((..(((((....)))))...)))))))).)))....))..))......... ( -22.10)
>consensus
UAUAUGGCAGACUUCAGUUUAAAGUUUACAUUUUAAAAGUGAGCGAAGCACUGCUAUUUAUUUUUAUACAUUUGUAUAUGUAGUAGAUAUUAGAUACGUUGUAAUCCAUUUU
...((((...((..(.((((...((((((.........)))))).)))).(((.((((((((..(((((....)))))...)))))))).)))....)..))...))))... (-21.25 = -21.25 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:19 2006