Locus 6067

Sequence ID X_DroMel_CAF1
Location 15,579,238 – 15,579,330
Length 92
Max. P 0.564990
window9854

overview

Window 4

Location 15,579,238 – 15,579,330
Length 92
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -27.70
Consensus MFE -21.05
Energy contribution -21.58
Covariance contribution 0.53
Combinations/Pair 1.15
Mean z-score -1.14
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.564990
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15579238 92 - 22224390
--UUAACCACAGUGG-------------UUUCGGAACCGAAUC---GGACUUUCUCAGCUAUGAUGAGAUGGUGGAGGAGUCCCUGCUGGGAGUAAGUUAUAUUUUUAUA
--....((.(((..(-------------.((((....))))..---((((((.(((.(((((......))))).))))))))))..)))))................... ( -28.10)
>DroPse_CAF1 6255 103 - 1
GCUUCAAUACAGCGGCCAAUCACAUCUUCCCCGGCAACGAAUCAACCGAUUUUCUCAGCUAUGACGAGAUGGUCGAGGAGUCCCUCUUGGGGGUAGGUUGCAU-------
...........((((((.(((.....((((.((....)).......((((..((((.........))))..)))).)))).(((....)))))).))))))..------- ( -31.20)
>DroSec_CAF1 7400 92 - 1
--UUAACCACAGUGG-------------CUUCGGACCCGAAUC---GGACUUUCUCAGCUAUGAUGAGAUGGUGGAGGAGUCCCUGCUGGGAGUAAGUUAUAUUUUUAUG
--....((.(((..(-------------.((((....))))..---((((((.(((.(((((......))))).))))))))))..)))))................... ( -27.80)
>DroSim_CAF1 5980 92 - 1
--UUAACCACAGUGG-------------CUUCGGACCCGAAUC---GGACUUUCUCAGCUAUGAUGAGAUGGUGGAGGAGUCCCUGCUGGGAGUAAGUUAUAUUUUUAUG
--....((.(((..(-------------.((((....))))..---((((((.(((.(((((......))))).))))))))))..)))))................... ( -27.80)
>DroEre_CAF1 6409 92 - 1
--GUAACCACAGUGG-------------CUUUGGACCCGAAUC---GGACUUUCUCAGCUAUGAUGAGAUGGUGGAAGAGUCCCUGCUAGGAGUAAGUUCAAUCUGUAUA
--......((((...-------------..((((((.......---(((((((..((.((((......))))))..))))))).(((.....))).)))))).))))... ( -22.10)
>DroYak_CAF1 5939 92 - 1
--UUAACCACAGUGG-------------CUUUGGACCCGAAUC---GGACUUUCUCAGCUAUGAUGAGAUGGUGGAGGAGUCCCUGCUGGGAGUAAGCUCCAUUUUCAUA
--.......(((..(-------------.((((....))))..---((((((.(((.(((((......))))).))))))))))..)))((((....))))......... ( -29.20)
>consensus
__UUAACCACAGUGG_____________CUUCGGACCCGAAUC___GGACUUUCUCAGCUAUGAUGAGAUGGUGGAGGAGUCCCUGCUGGGAGUAAGUUAUAUUUUUAUA
......((.((((((..............((((....)))).....((((((.(((.(((((......))))).)))))))))))))))))................... (-21.05 = -21.58 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:17 2006