Locus 6066

Sequence ID X_DroMel_CAF1
Location 15,572,626 – 15,572,746
Length 120
Max. P 0.999741
window9853

overview

Window 3

Location 15,572,626 – 15,572,746
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.83
Mean single sequence MFE -51.04
Consensus MFE -46.88
Energy contribution -46.16
Covariance contribution -0.72
Combinations/Pair 1.18
Mean z-score -2.44
Structure conservation index 0.92
SVM decision value 3.98
SVM RNA-class probability 0.999741
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15572626 120 + 22224390
GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCCAACCAUCGGCGGCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCAAGGACCAUCUGCCCGAAUCUC
((((((...(((((((.(.(((((.....))))).)))))))))))(((((.......(((.((((((((((....))))))))...)).))).......)))))....)))........ ( -52.94)
>DroSec_CAF1 4210 120 + 1
GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCCAACCAUCGGCGCCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCCAGGACCAUCUGCCCCAAUCUC
(((...((.(((((((.(.(((((.....))))).)))))))))).(((((.......(((.((((((((((....))))))))...)).))).......)))))....)))........ ( -50.54)
>DroSim_CAF1 4020 120 + 1
GGCGCCGCAGCCGGUGAGGUGGCUUCACUGGCCAACCAUCGGCGCCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCCAGGACCAUCUGCCCCAAUCUC
(((((((..((((((((((...)))))))))).......)))))))(((((.......(((.((((((((((....))))))))...)).))).......)))))............... ( -52.54)
>DroEre_CAF1 4271 120 + 1
GGCGCUGCAGCCGAUGAGGUAGCUUCACUGGCUAUCCAUCGACGCCGGCUCAUCAUCCACUGCGUCUGCAAUUGCUGGCGUGGAAUUCGAAGUCCUCCCUGGACCAUCGGCCAAAAUCUC
(((((....))(((((.(((((((.....))))))))))))..)))(((..........(..((((.((....)).))))..)....(((.((((.....))))..))))))........ ( -46.80)
>DroYak_CAF1 4449 120 + 1
GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCUACCCAUCGGCGCCGGCUCAUCAUCCACUGCGUCUGCAGCUGCUGGCGCUGAAUUCUAAGUCCUCCCAGGACCAUCUGCCCGAAUCUC
(((((((..(((((((.(((((((.....))))))))))))))..))))............(((((.((....)).)))))..........((((.....)))).....)))........ ( -52.40)
>consensus
GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCCAACCAUCGGCGCCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCCAGGACCAUCUGCCCCAAUCUC
(((((((..(((((((.(.(((((.....))))).))))))))..))))..........(((((((.((....)).)))))))........((((.....)))).....)))........ (-46.88 = -46.16 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:16 2006