Locus 6065

Sequence ID X_DroMel_CAF1
Location 15,572,226 – 15,572,346
Length 120
Max. P 0.765921
window9852

overview

Window 2

Location 15,572,226 – 15,572,346
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -43.44
Consensus MFE -42.00
Energy contribution -42.12
Covariance contribution 0.12
Combinations/Pair 1.05
Mean z-score -1.21
Structure conservation index 0.97
SVM decision value 0.52
SVM RNA-class probability 0.765921
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15572226 120 - 22224390
CAGAAUGUGCUCUUUGUGGCGGCCAAAUAUCCGACGGGUCAGCAGCCGCGGGAGAUAUUCUUCUUCCGCGAGGGCUCGGUGGUCUUUUGGAACUGCAGCGACAUCGAGACGAACAAUGUG
((.(.(((.(((..(((.((.((......(((((.((..((.(((((((((((((......))))))))...)))).).))..)).)))))...)).)).)))..)))....))).).)) ( -45.90)
>DroSec_CAF1 3810 120 - 1
CAGAAUGUGCUCUUUGUGGCGGCCAAAUAUCCGACAGGUCAGCAGCCGCGGGAGAUAUUCUUUUUCCGCGAGGGCUCGGUGGUCUUUUGGAACUGCAGCGACAUCGAGACGAACAAUGUG
((.(.(((.(((..(((.((.((......(((((.((..((.(((((((((((((......))))))))...)))).).))..)).)))))...)).)).)))..)))....))).).)) ( -43.30)
>DroSim_CAF1 3620 120 - 1
CAGAAUGUGCUCUUUGUGGCGGCCAAAUAUCCGACAGGUCAGCAGCCGCGGGAGAUAUUCUUUUUCCGCGAGGGCUCGGUGGUCUUUUGGAACUGCAGCGACAUCGAGACGAACAAUGUG
((.(.(((.(((..(((.((.((......(((((.((..((.(((((((((((((......))))))))...)))).).))..)).)))))...)).)).)))..)))....))).).)) ( -43.30)
>DroEre_CAF1 3871 120 - 1
CAGAAUGUGCUCUUUGUGGCGUCUAAAUAUCCGACGGGUCAGCAACCGCGGGAGAUAUUCUUCUUCCGCGAGGGCUCGGUGGUCUUUUGGAACUGCAGCGACAUCGAGACGAACAAUGUG
((.(.(((.(((..(((.((.((((((...(((.((((((......(((((((((......)))))))))..)))))).)))...))))))......)).)))..)))....))).).)) ( -43.20)
>DroYak_CAF1 4049 120 - 1
CAGAAUGUGCUCUUUGUGGCGGCCAAAUAUCCGACGGGUCAGCAGCCGCGUGAGAUAUUUUUCUUUCGCGAGGGCUCGGUGGUCUUUUGGAACUGCAGCGACAUCGAGACGAACAAUGUG
((.(.(((.(((..(((.((.((......(((((.((..((.(((((.(((((((........)))))))..)))).).))..)).)))))...)).)).)))..)))....))).).)) ( -41.50)
>consensus
CAGAAUGUGCUCUUUGUGGCGGCCAAAUAUCCGACGGGUCAGCAGCCGCGGGAGAUAUUCUUCUUCCGCGAGGGCUCGGUGGUCUUUUGGAACUGCAGCGACAUCGAGACGAACAAUGUG
((.(.(((.(((..(((.((.((......(((((.((..((.(((((((((((((......))))))))...)))).).))..)).)))))...)).)).)))..)))....))).).)) (-42.00 = -42.12 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:15 2006