Locus 6064

Sequence ID X_DroMel_CAF1
Location 15,571,826 – 15,571,946
Length 120
Max. P 0.971862
window9851

overview

Window 1

Location 15,571,826 – 15,571,946
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.50
Mean single sequence MFE -39.46
Consensus MFE -37.11
Energy contribution -37.19
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.94
SVM decision value 1.68
SVM RNA-class probability 0.971862
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15571826 120 - 22224390
GCUACAUAGACUCCAUAGAGCAUCUCACCGAGGAUCUAAAGCGUGGUCGCCGAUUAAGAAUCUCGCGGGCGGCCAUGCUGCGAAAAACCGGUGAAUUAUUUGCCCUGCGUCAUGUGAUCA
..(((((.(((....(((.(((..((((((.(.......((((((((((((................))))))))))))........)))))))......))).))).)))))))).... ( -40.35)
>DroSec_CAF1 3410 120 - 1
GCUACAUAGACUCCAUAGAGCAUCUCACCGAGGAUCUAAAGCGUGGUCGCCGAUUAAGAAUCUCGCGGGCGGCCAUGCUGCGAAAAACCGGUGAAUUAUUUGCCCUGCGUCAUGUAAUCA
..(((((.(((....(((.(((..((((((.(.......((((((((((((................))))))))))))........)))))))......))).))).)))))))).... ( -40.65)
>DroSim_CAF1 3220 120 - 1
GCUACAUAGACUCCAUAGAGCAUCUCACCGAGGAUCUAAAGCGUGGUCGCCGAUUAAGAAUCUCGCGGGCGGCCAUGCUGCGAAAAACCGGUGAAUUAUUUGCCCUGCGUCAUGUAAUCA
..(((((.(((....(((.(((..((((((.(.......((((((((((((................))))))))))))........)))))))......))).))).)))))))).... ( -40.65)
>DroEre_CAF1 3471 120 - 1
GCUACAUAGAUUCCAUAGAGCAUCUUACCGAGGAUCUAAAGCGUGGUCGCCGACUAAGAAUCUCGCGGGCGGCCAUGCUGCGAAAAACCGGCGAACUGUUUGCCCUGCGUCAUGUGAUCA
........(((..(((.(((((.........((......((((((((((((................))))))))))))........))(((((.....))))).))).)))))..))). ( -37.93)
>DroYak_CAF1 3649 120 - 1
GCUAUAUAGACUCCAUUGAGCAUCUCACCGAGGAUCUAAAGCGUGGUCGCCGACUAAGAAUCUCUCGGGCGGCCAUGCUGCGAAAAACCGGCGAACUGUUUGCCCUUCGUCAUGUGAUCA
..........(((...((((...))))..)))((((...((((((((((((((...........)).))))))))))))(((((.....(((((.....))))).))))).....)))). ( -37.70)
>consensus
GCUACAUAGACUCCAUAGAGCAUCUCACCGAGGAUCUAAAGCGUGGUCGCCGAUUAAGAAUCUCGCGGGCGGCCAUGCUGCGAAAAACCGGUGAAUUAUUUGCCCUGCGUCAUGUGAUCA
..(((((.(((....(((.(((..((((((.(.......((((((((((((................))))))))))))........)))))))......))).))).)))))))).... (-37.11 = -37.19 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:14 2006