Locus 6063

Sequence ID X_DroMel_CAF1
Location 15,571,506 – 15,571,626
Length 120
Max. P 0.991439
window9850

overview

Window 0

Location 15,571,506 – 15,571,626
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.17
Mean single sequence MFE -43.86
Consensus MFE -39.50
Energy contribution -39.90
Covariance contribution 0.40
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.90
SVM decision value 2.27
SVM RNA-class probability 0.991439
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15571506 120 - 22224390
AUGAUCAUAAUCCUGAUCAUGGUAGAGGUGGGCUUCGAAGUGCUGCACUUCGUCAGCGAUCACAGUGAUUCGCAUAAGCUAGAGGUCCUGCCACUGGCUGCUCCUGCCGCCUCGAUUCCC
(((((((......)))))))((..((((((((((.(((((((...)))))))..))).....(((.((...(((...(((((.((.....)).))))))))))))))))))))....)). ( -45.40)
>DroSec_CAF1 3090 120 - 1
AUGAUCAUAAUCCUGAUCAUGGUGGAGGUGGGCUUCGAAGUGCUGCACUUCGUCAGCGAUCACAGUGAACCGCAUAAACUAGAGGUCCUGCCACUGGCUGCUCCUGCCGCCUCGAUUCCC
(((((((......)))))))(((((....(((((((((((((...))))))....(((.((.....))..)))........)))))))..)))))(((.((....)).)))......... ( -41.50)
>DroSim_CAF1 2900 120 - 1
AUGAUCAUAAUCCUGAUCAUGGUGGAGGUGGGCUUCGAAGUGCUGCACUUCGUCAGCGAUCACAGUGAACCGCAUAAACUAGAGGUCCUGCCACUGGCUGCUCCUGCCGCCUCGAUUCCC
(((((((......)))))))(((((....(((((((((((((...))))))....(((.((.....))..)))........)))))))..)))))(((.((....)).)))......... ( -41.50)
>DroEre_CAF1 3151 120 - 1
AUGAUCAUAAUCCUGAUCAUGGUGGAGGUGGGUUUUGAAGUGCUGCACUUCGUCAGCGAUCACAGUGAUCCGCAUAAGCUAGAGGUCCUGCCACUGGCGGCUCCUGCCGCCUCAAUUCCC
(((((((......)))))))((..(((((((.....((((((...))))))(((.((((((.....))).)))....(((((.((.....)).)))))))).....)))))))....)). ( -45.70)
>DroYak_CAF1 3329 120 - 1
AUGAUCAUAAUCCUGAUCAUGGUGGAGGUGGGCUUUGAAGUGCUGCACUUCGUCAGCGAUCACAGCGAUCCGCACAAGCUAGAGGUCCUGCCACUGGCGGCACCUGGCGCCUCAAUUCCC
(((((((......)))))))((..(((((((((((.((((((...))))))....((((((.....))).)))..)))))..((((.(((((...))))).))))..))))))....)). ( -45.20)
>consensus
AUGAUCAUAAUCCUGAUCAUGGUGGAGGUGGGCUUCGAAGUGCUGCACUUCGUCAGCGAUCACAGUGAUCCGCAUAAGCUAGAGGUCCUGCCACUGGCUGCUCCUGCCGCCUCGAUUCCC
(((((((......)))))))((..((((((((((.(((((((...)))))))..))).....(((.((...((....(((((.((.....)).))))).))))))))))))))....)). (-39.50 = -39.90 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:13 2006