Locus 6062

Sequence ID X_DroMel_CAF1
Location 15,567,596 – 15,567,691
Length 95
Max. P 0.689668
window9849

overview

Window 9

Location 15,567,596 – 15,567,691
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 91.68
Mean single sequence MFE -19.46
Consensus MFE -15.11
Energy contribution -15.59
Covariance contribution 0.48
Combinations/Pair 1.19
Mean z-score -1.66
Structure conservation index 0.78
SVM decision value 0.33
SVM RNA-class probability 0.689668
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15567596 95 - 22224390
ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAGCCAGUGGUAUGUUUGGAAAUCAGUUGUAAAUACAAAUAAACUACCCAAUUGAUAUUA
.(((.((((((.(((((.(((((....))))).)))))......)))))).)))..((((((((...................)))))))).... ( -21.21)
>DroSec_CAF1 3158 95 - 1
ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAACCAGUGGUAUGUUUGGAAAUCAGUUUUAAAUAUAAAUAAACUAUCCAAUUGAUAUUA
....(((.((..(((((.(((((....))))).))))).))))).(((((((((((.....))))))))))).......((((.....))))... ( -18.60)
>DroSim_CAF1 3138 95 - 1
ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAACCAGUGGUAUGUUUGGAAAUCAGUUUUAAAUAUAAAUAAACUAUCCAAUUGAUAUUA
....(((.((..(((((.(((((....))))).))))).))))).(((((((((((.....))))))))))).......((((.....))))... ( -18.60)
>DroEre_CAF1 3110 95 - 1
ACUACACGUGCAUUUGCCGCAGCUUACACUGCAGUAAGCCAGUGGUAAGUUUGGAAAUUAAUUGUAAAUAUAAAUAAACCAACCAAUUGAUAUUA
...........(((((((((.((((((......))))))..)))))))))......((((((((...................)))))))).... ( -20.11)
>DroYak_CAF1 3090 95 - 1
ACUACACGUGCAUUUGCCGUAGUUUACACUGCAGUACACGAGUGGUAAGUUUGAAAAUAAAUUGUAAAUAUAAAUAAACCAACCAAUUGGUAUUA
(((((.((((....(((.(((((....))))).))))))).)))))...............................(((((....))))).... ( -18.80)
>consensus
ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAACCAGUGGUAUGUUUGGAAAUCAGUUGUAAAUAUAAAUAAACUAACCAAUUGAUAUUA
.(((.((((((.(((((.((((......)))).)))))......)))))).)))..((((((((...................)))))))).... (-15.11 = -15.59 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:12 2006