Locus 6061

Sequence ID X_DroMel_CAF1
Location 15,567,362 – 15,567,474
Length 112
Max. P 0.578387
window9848

overview

Window 8

Location 15,567,362 – 15,567,474
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.76
Mean single sequence MFE -35.55
Consensus MFE -16.95
Energy contribution -18.07
Covariance contribution 1.12
Combinations/Pair 1.25
Mean z-score -2.23
Structure conservation index 0.48
SVM decision value 0.09
SVM RNA-class probability 0.578387
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15567362 112 - 22224390
CGGUGGCCACGAAUAGCAUUCCUCUGGCGAAACUGGAGGCCAAGAUGCAGCUGAUCUACACCUGCAAGGUGUGCCAGACCCGGAACAUGAAGACCAUUUCGAAGCUGGCAUA
(((((....).....(((((((((..(.....)..))))....))))).))))....(((((.....)))))(((((...((((..(((.....)))))))...)))))... ( -33.20)
>DroVir_CAF1 3255 112 - 1
GGGUGGCCAGCAAGAGCAUACCCUUGGCGGAGCUGCAGACCAAAAUGCAGCUCAUCUAUACGUGCAAGGUGUGCCAGAGCAGGAACAUGGAGACCAUAUCGAAGGUGGCCUA
((((.(((.((....(((((((.((((((((((((((........)))))))).......))).))))))))))....))......((((...))))......))).)))). ( -41.71)
>DroPse_CAF1 4030 112 - 1
ACAAGGCCACUAACAGCAUACCGCUGGGCGAGCUGCAAACGAAAAUGCAGCUCAUUUACACCUGCAAGAUCUGCCAGACGCGCAACAUGAAGACCAUUUCAAAGGUGGCCUA
...((((((((..((((.....)))).((((((((((........))))))))........(((((.....)).)))..))......(((((....)))))..)))))))). ( -39.60)
>DroGri_CAF1 3556 112 - 1
GUGUGGUCAGCAAGAGCAUACCACUGGCGGAGCUACAAACGAAAAUGCAAUUGAUCUACACAUGCAAAGUGUGCCAGACGCGGAAUAUGGAGACCAUAUCAAAGAUUGCCUA
((((((((.((....))......(((((...((.............)).........((((.......)))))))))..............))))))))............. ( -24.52)
>DroMoj_CAF1 3204 112 - 1
GCGUUGCCACCAAUAGUAUACCAUUGGCUGAGCUGCAGACCAAGAUGCAGCUAAUCUAUACGUGCAAAGUGUGCCAGACCCGAAAUAUGGAGACCAUAUCAAAGGUGGCCUA
.....((((((............(((((..(((((((........))))))).....((((.......))))))))).......((((((...))))))....))))))... ( -34.70)
>DroPer_CAF1 5504 112 - 1
ACAAGGCCACUAACAGCAUACCGCUGGGCGAGCUGCAAACGAAAAUGCAGCUCAUUUACACCUGCAAGAUCUGCCAGACGCGCAACAUGAAGACAAUUUCAAAGGUGGCCUA
...((((((((..((((.....)))).((((((((((........))))))))........(((((.....)).)))..))......(((((....)))))..)))))))). ( -39.60)
>consensus
GCGUGGCCACCAACAGCAUACCACUGGCGGAGCUGCAAACCAAAAUGCAGCUCAUCUACACCUGCAAGGUGUGCCAGACCCGGAACAUGAAGACCAUAUCAAAGGUGGCCUA
....(((((..............(((((..(((((((........))))))).....((((.......)))))))))..........(((........)))....))))).. (-16.95 = -18.07 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:11 2006