Locus 6060

Sequence ID X_DroMel_CAF1
Location 15,566,596 – 15,566,691
Length 95
Max. P 0.916561
window9847

overview

Window 7

Location 15,566,596 – 15,566,691
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 81.33
Mean single sequence MFE -34.52
Consensus MFE -26.85
Energy contribution -27.30
Covariance contribution 0.45
Combinations/Pair 1.40
Mean z-score -2.37
Structure conservation index 0.78
SVM decision value 1.11
SVM RNA-class probability 0.916561
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15566596 95 - 22224390
CUCAAUCAGCUCCAUGGAGCGCUUUAUUGCGGUCUGCAUGUCCUCAAGGCUGGAUAAGCGGCCAAUCCGCUUGACUAGCCGUCGCAUCUGCUGAA
.....(((((.....(((.(((......))).)))((.((....)).((((((.(((((((.....))))))).))))))...))....))))). ( -37.30)
>DroPse_CAF1 3263 95 - 1
GCCGACCAGCUUUAGAGCACGGUGCAGAGCGGUUUCCAUUUUCUGAAGCGUGGACAGACGACAGAUGCGCUUAACCAGGCGACGCAUUUGCAGGA
.((..((((((((((((...((.((......))..))...))))))))).)))......(.(((((((((((....))))...)))))))).)). ( -27.90)
>DroSec_CAF1 2151 95 - 1
CUCAAUCAGCUCCAUGGAGCGCUUUAUUGCGGUCUGAAUGUCCUCAAGGCUGGACAAGCGGCCAAUCCGCUUGACUAGCCGUCGCAUUUGCUGAA
.....(((((.....(((.(((......))).)))((((((......((((((.(((((((.....))))))).))))))...))))))))))). ( -40.50)
>DroSim_CAF1 2131 95 - 1
CUCAAUCAGCUCCAUGGAGCGCUUUAUUGCGGUCUGCAUGUCCUCAAGUCUGGACAAGCGGCCAAUUCGCUUGACUAGCCGUCGCAUCUGCUGAA
.....(((((...(((((((((......))((.((((.(((((........))))).)))))).....))))(((.....))).)))..))))). ( -34.40)
>DroEre_CAF1 2105 95 - 1
UCCAAUCAGCUCCAUGGACCGCUUUAGAGCGGUCUGCAUGUCCUGAAGACUGGACAAGCGUCCAAUCCGCUUGACCAGCCGGCGCAUCUGUUGAA
.....(((((.....((((((((....))))))))..((((.(((..(.((((.((((((.......)))))).)))))))).))))..))))). ( -35.50)
>DroYak_CAF1 2068 95 - 1
UCCAAUCAGCUCCAUGGAGCGCUUUAGAGCGGUCUGCAUGUCCUCAACGCUCAACAAGCGGGCAAUCCGCUUGACUAGCCGCCGCAUCUGUUGAA
.....(((((((....))))....(((((((((..((.((....))........(((((((.....)))))))....)).))))).)))).))). ( -31.50)
>consensus
CCCAAUCAGCUCCAUGGAGCGCUUUAGAGCGGUCUGCAUGUCCUCAAGGCUGGACAAGCGGCCAAUCCGCUUGACUAGCCGUCGCAUCUGCUGAA
.....(((((....((((.(((......))).))))...........((((((.(((((((.....))))))).)))))).........))))). (-26.85 = -27.30 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:10 2006