Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,682,705 – 1,682,797 |
Length | 92 |
Max. P | 0.805813 |
Location | 1,682,705 – 1,682,797 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -21.06 |
Energy contribution | -20.78 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.46 |
Structure conservation index | 0.90 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1682705 92 - 22224390 CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA .....(((((.....((((.(((..((((((.(((.((((....))))(((.....)))))).)))))..)..))).)))))))))...... ( -22.00) >DroSec_CAF1 23020 92 - 1 CUCCCUCGCUCCUUUGUGAUUGUUGUUGACUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA .....((((......))))(((((((.(((.((((.((.(((((....(((.....)))..))))).)).)))).))).)))))))...... ( -23.30) >DroSim_CAF1 16844 92 - 1 CUCCCUCGCUCCUUUGUGAUUGUUGUUGACUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA .....((((......))))(((((((.(((.((((.((.(((((....(((.....)))..))))).)).)))).))).)))))))...... ( -23.30) >DroEre_CAF1 18634 92 - 1 CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGUGAUCAUCAUGACGUUCACAGCGACAACAA .....((((......))))...............((((((((((....(((.....))).(((((.(........).))))))))))))))) ( -23.10) >DroYak_CAF1 16525 92 - 1 CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUGCAUUGUUGUUGCCGGCGCAUUUACUGCAUGUGAUCAUCAUGACGUUCACAGCGACAACAA .....(((((.....((((.(((..(((((..(((.((((....))))(((.....))))))..))))..)..))).)))))))))...... ( -24.90) >consensus CUCCCUCGCUCCUUUGUGAUUGUUGUUGAUUUCAUUGUUGUUGCCGGCGCAUUUAUUGCAUGCGAUCAUCAUGACGUUCACAGCGACAACAA .....((((......))))(((((((.(((.((((.((.(((((....(((.....)))..))))).)).)))).))).)))))))...... (-21.06 = -20.78 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:16 2006