| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,556,699 – 15,556,804 |
| Length | 105 |
| Max. P | 0.574141 |
| Location | 15,556,699 – 15,556,804 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -41.25 |
| Consensus MFE | -20.62 |
| Energy contribution | -21.23 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15556699 105 + 22224390 CUCUGCAUCAUCUGGUGCAGGACAAUCCUCGACCAGUGGCGGCCCAGUGCGUCCAGUGGUCAACUUCGAUCAAUUGUGGGAUGAUUUCCUGCAGAGCGAGGGACU .((((((((....))))))))....((((((((((.(((((........)).))).)))))............(((..(((.....)))..)))...)))))... ( -42.50) >DroPse_CAF1 15121 90 + 1 AUCUGGCU------CUGCAGGU---------GCCACUGGAGGCCCCGUCCGGCCCGUGCUCAACUUUGACCAGCUCUGGGACGACUUUCUGCAGAGCGAGGGCCU .(((.(((------((((((((---------.(((((((.((((......)))).((.....)).....))))...))).))......))))))))).))).... ( -35.90) >DroSec_CAF1 11733 105 + 1 CUCUGCAUCAUCUGGUGCAGGACAGUCCUCGACCAGUGGCGGCCCAGUGCGUCCAGUGGUCAACUUCGAUCAAUUGUGGGACGAUUUCCUGCAGAGCGAGGGACU .((((((((....))))))))..((((((.(((((.(((((........)).))).)))))....(((.((...((..(((.....)))..)))).))))))))) ( -43.20) >DroEre_CAF1 13538 105 + 1 CUCUGCUUCCUCUGCUGCAGGACAAUCAUCGAGCAGUGGAGGCCCAGUGCGUCCAGUGGUCAACUUUGAUCAACUGUGGGACGAUUUCCUGCAGAGCGAGGGACU ......((((((..((((((((.((((.....(((.(((....))).)))((((..((((((....))))))......))))))))))))))))...)))))).. ( -46.30) >DroYak_CAF1 11617 105 + 1 CUCUGCAUCCUCUGCUGCAGGACAAUCAUCGGCCAGUGGAGGUCCAGUGCGUCCAGUGGUCAACUUUGAUCAAUUGUGGGACGAUUUCUUGCAGAGCGAGGGACU .......(((((..((((((((.((((.(((((((.((((.((.....)).)))).)))))........(((....))))).))))))))))))...)))))... ( -39.80) >DroPer_CAF1 16365 90 + 1 UUCUGGCU------CUGCAGGU---------GCCACUGGAGGGCCCGUCCGGCCCGUGCUCAACUUUGACCAGCUCUGGGACGACUUUCUGCAGAGCGAGGGCCU .(((.(((------((((((((---------.(((((((.(((((.....)))))((.....)).....))))...))).))......))))))))).))).... ( -39.80) >consensus CUCUGCAUC_UCUGCUGCAGGACAAUC_UCGACCAGUGGAGGCCCAGUGCGUCCAGUGGUCAACUUUGAUCAACUGUGGGACGAUUUCCUGCAGAGCGAGGGACU .(((((..........)))))............((.(((....))).)).((((..(((((......))))).((((((((.....))))))))......)))). (-20.62 = -21.23 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:09 2006