Locus 6058

Sequence ID X_DroMel_CAF1
Location 15,548,633 – 15,548,736
Length 103
Max. P 0.622584
window9845

overview

Window 5

Location 15,548,633 – 15,548,736
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.64
Mean single sequence MFE -26.15
Consensus MFE -16.92
Energy contribution -17.73
Covariance contribution 0.81
Combinations/Pair 1.26
Mean z-score -1.31
Structure conservation index 0.65
SVM decision value 0.18
SVM RNA-class probability 0.622584
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15548633 103 - 22224390
AUGGAGUUGUACAGGUGACGCGAGAACGAGUGCUCGAUCAGCAGUGUGGUAAAGUUGAGUACGUGCAGCAGUAGUGUGACAUCCUGAGAAG----GAUAAAUGGAAA
.....(((((((.(....)..........(((((((((..((......))...))))))))))))))))...........(((((....))----)))......... ( -28.10)
>DroVir_CAF1 5161 104 - 1
AUUGAAUUGUACAAAUGGCGCGAGAACGAAUGCUCAAUCAGCAGAGUUGUGAAAUUGAGUACGUGCAGCAGCAGGGUAACAUCCUGUUAAAGAA---AAAUUGGAAA
.((.((((.........(((((........((((((((..((......))...)))))))))))))...((((((((...))))))))......---.)))).)).. ( -23.50)
>DroPse_CAF1 6605 101 - 1
AUCGAGUUGUACAGAUGCCGCGAGAACGAGUGCUCGAUCAGGAGUGUCGUAAAGUUGAGUACAUGCAGCAGCAGUGUAACGUCCUGCG--G----GAUAUAAGGCAU
.......(((....((.((((.((.(((.(((((((((.(.(.....).)...))))))))).(((....)))......))).)))))--)----.)).....))). ( -26.50)
>DroGri_CAF1 5671 107 - 1
AUUGAAUUGUACAAAUGGCGCGAGAACGAAUGCUCAAUGAGCAGUGUUGUAAAAUUGAGUACGUGCAGCAGCAGGGUCACAUCCUGAAUAAAAGAGACAACGAAAGA
......((((.......(((((........((((((((..((......))...))))))))))))).....((((((...))))))..........))))(....). ( -22.80)
>DroMoj_CAF1 5173 107 - 1
AUUGAAUUGUACAAAUGACGCGAGAAUGAGUGCUCGAUGAGCAAUGUUGUGAAAUUGAGUACGUGCAGUAGCAAAGUAACAUCCUGUGAGAGAAGGACAAUGGGAGA
((((.(((((((......(....).....(((((((((..(((....)))...))))))))))))))))............((((.(....).))))))))...... ( -27.50)
>DroPer_CAF1 7759 101 - 1
AUCGAGUUGUACAGAUGCCGCGAGAACGAGUGCUCGAUCAGGAGUGUCGUAAAGUUGAGCACAUGCAGCAGCAGUGUAACGUCCUGCG--G----GAUAUAAGGCAU
.......(((....((.((((.((.(((.(((((((((.(.(.....).)...))))))))).(((....)))......))).)))))--)----.)).....))). ( -28.50)
>consensus
AUUGAAUUGUACAAAUGACGCGAGAACGAGUGCUCGAUCAGCAGUGUUGUAAAAUUGAGUACGUGCAGCAGCAGUGUAACAUCCUGAGAAA____GAUAAAAGGAAA
.....(((((((......(....).....(((((((((..((......))...)))))))))))))))).((((.........)))).................... (-16.92 = -17.73 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:08 2006