Locus 6056

Sequence ID	X_DroMel_CAF1
Location	15,546,678 – 15,546,809
Length	131
Max. P	0.794147

overview

Window 1

Location	15,546,678 – 15,546,773
Length	95
Sequences	3
Columns	95
Reading direction	forward
Mean pairwise identity	92.28
Mean single sequence MFE	-24.97
Consensus MFE	-19.80
Energy contribution	-20.80
Covariance contribution	1.00
Combinations/Pair	1.06
Mean z-score	-2.19
Structure conservation index	0.79
SVM decision value	0.04
SVM RNA-class probability	0.555799
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15546678 95 + 22224390
UGAGAAGAGCAGCAAUAUGCUGCAUUUAAAUAUAAUUGUGAGUAUGGCUAGUGGUAUUUCCGAGAACGCAUAAACACGCACACAUACAUUGGUGC
........(((((.....)))))..............(((..(((((.(..(((.....)))..).).))))..)))((((.((.....)))))) ( -22.30)
>DroSec_CAF1 1665 95 + 1
UAAGAAAAGCAGCAGUUUGGUGCAGUUAAAUAUAAUUGUGAGUAUCGUUAGUGGAAUUUCCGAGAACGCAUAAAUACGCACACAGACAUUGGUGC
........(((.((((((((((((((((....)))))(((..(((((((..(((.....)))..)))).)))..))))))).)))))..)).))) ( -26.30)
>DroSim_CAF1 1652 95 + 1
UGAGAAAAGCAGCAGUUUGGUGCAGUUAAAUAUAAUUGUGAGUAUCGUUAGUGGAAUUUCCGAGAACGCAUAAAUACGCACACAGACAUUGGUGC
........(((.((((((((((((((((....)))))(((..(((((((..(((.....)))..)))).)))..))))))).)))))..)).))) ( -26.30)
>consensus
UGAGAAAAGCAGCAGUUUGGUGCAGUUAAAUAUAAUUGUGAGUAUCGUUAGUGGAAUUUCCGAGAACGCAUAAAUACGCACACAGACAUUGGUGC
........(((.((((((((((((((((....)))))(((..(((((((..(((.....)))..)))).)))..))))))).)))))..)).))) (-19.80 = -20.80 +   1.00)

alignment

secondary structure

dotplot

Window 2

Location	15,546,713 – 15,546,809
Length	96
Sequences	3
Columns	96
Reading direction	reverse
Mean pairwise identity	96.53
Mean single sequence MFE	-29.20
Consensus MFE	-27.81
Energy contribution	-27.70
Covariance contribution	-0.11
Combinations/Pair	1.07
Mean z-score	-1.88
Structure conservation index	0.95
SVM decision value	0.60
SVM RNA-class probability	0.794147
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15546713 96 - 22224390
GUGCGUGCGUGUGCCUGUUUCCGCGAGUCUUUUCUCGCACCAAUGUAUGUGUGCGUGUUUAUGCGUUCUCGGAAAUACCACUAGCCAUACUCACAA
....(((.(((((.(((((((((((((......)))))...((((((((..........))))))))...))))))......)).))))).))).. ( -27.80)
>DroSec_CAF1 1700 96 - 1
GUGCGUGCGUGUGCCUGUUUCCGCGAGUCUUUUCUCGCACCAAUGUCUGUGUGCGUAUUUAUGCGUUCUCGGAAAUUCCACUAACGAUACUCACAA
(((.(((((((((...(((((((((((......)))))..........(.(.(((((....))))).).)))))))..)))..))).))).))).. ( -29.90)
>DroSim_CAF1 1687 96 - 1
GUGCGUGCGUGUGCCUGUUUCCGCGAGUCUUUUCUCGCACCAAUGUCUGUGUGCGUAUUUAUGCGUUCUCGGAAAUUCCACUAACGAUACUCACAA
(((.(((((((((...(((((((((((......)))))..........(.(.(((((....))))).).)))))))..)))..))).))).))).. ( -29.90)
>consensus
GUGCGUGCGUGUGCCUGUUUCCGCGAGUCUUUUCUCGCACCAAUGUCUGUGUGCGUAUUUAUGCGUUCUCGGAAAUUCCACUAACGAUACUCACAA
(((.(((((((((...(((((((((((......)))))..........(.(.(((((....))))).).)))))))..)))..))).))).))).. (-27.81 = -27.70 +  -0.11)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:05 2006