Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,543,549 – 15,543,662 |
Length | 113 |
Max. P | 0.784667 |
Location | 15,543,549 – 15,543,662 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.51 |
Mean single sequence MFE | -27.97 |
Consensus MFE | -25.44 |
Energy contribution | -25.07 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.20 |
Mean z-score | -1.38 |
Structure conservation index | 0.91 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15543549 113 + 22224390 AUAUAAAAUACAUUUGA-------UGGACAUUUUGCAGAUCCUUGGAAGCAUUGUGCCCGGUCUUUUCCCGCCAUUAUUUCUAUGGGCAGCACAGUUCAAUUAACAGGAUCACGUUCAAG .................-------(((((........((((((...((..(((((((.(((.......)))((((.......))))...)))))))....))...))))))..))))).. ( -21.40) >DroSec_CAF1 5430 119 + 1 -UUUAAAAUACAUUUGAUUUUAAAUGAACAUUUUGCAGAUCCUGGGCAGCACUGUGCCCGGUCUUUUCCCGCCAUUAUUUCCAUGGGCAGCACAGUUCAAUUAACAGGAUCAUGUUCAUG -.(((((((.(....))))))))((((((((......(((((((......(((((((..((......)).(((............))).)))))))........))))))))))))))). ( -33.14) >DroSim_CAF1 3563 119 + 1 -UUUAAAAUACAUUUGAUUUUAAAUGAACAUUUUGCAGAUCCUGGGCAGCACUGUGCCCGGUCUUUUCCCGCCAUUAUUUCCAUGGGCAGCACAGUUCAAUUAACAGGAUCAUGUUCAAG -((((((((.(....)))))))))(((((((......(((((((......(((((((..((......)).(((............))).)))))))........)))))))))))))).. ( -32.64) >DroYak_CAF1 5430 120 + 1 AUUUACCAUACAAUUUAAUUUAAAGGAACAUUUUGCAGAUCCUGGGCAGCACUGUGUCUGUUAUUUUGGCGCCUUUAUUUCUAUGGGUAGCACUGUUCAAUUUACAGGAUCAUGUUCAAG .........................((((((......((((((((((.((...(((.....)))....)))))..........((..((....))..)).....)))))))))))))... ( -24.70) >consensus _UUUAAAAUACAUUUGAUUUUAAAUGAACAUUUUGCAGAUCCUGGGCAGCACUGUGCCCGGUCUUUUCCCGCCAUUAUUUCCAUGGGCAGCACAGUUCAAUUAACAGGAUCAUGUUCAAG .........................((((((......(((((((......(((((((..((.......))(((............))).)))))))........)))))))))))))... (-25.44 = -25.07 + -0.38)
Location | 15,543,549 – 15,543,662 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.51 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -23.33 |
Energy contribution | -24.64 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.79 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15543549 113 - 22224390 CUUGAACGUGAUCCUGUUAAUUGAACUGUGCUGCCCAUAGAAAUAAUGGCGGGAAAAGACCGGGCACAAUGCUUCCAAGGAUCUGCAAAAUGUCCA-------UCAAAUGUAUUUUAUAU .((((......((((((((......(((((.....)))))......)))))))).......(((((...(((.((....))...)))...))))).-------))))............. ( -25.10) >DroSec_CAF1 5430 119 - 1 CAUGAACAUGAUCCUGUUAAUUGAACUGUGCUGCCCAUGGAAAUAAUGGCGGGAAAAGACCGGGCACAGUGCUGCCCAGGAUCUGCAAAAUGUUCAUUUAAAAUCAAAUGUAUUUUAAA- .(((((((((((((((........((((((((..((((.......))))(((.......)))))))))))......)))))))......))))))))((((((((....).))))))).- ( -36.74) >DroSim_CAF1 3563 119 - 1 CUUGAACAUGAUCCUGUUAAUUGAACUGUGCUGCCCAUGGAAAUAAUGGCGGGAAAAGACCGGGCACAGUGCUGCCCAGGAUCUGCAAAAUGUUCAUUUAAAAUCAAAUGUAUUUUAAA- ..((((((((((((((........((((((((..((((.......))))(((.......)))))))))))......)))))))......)))))))(((((((((....).))))))))- ( -36.24) >DroYak_CAF1 5430 120 - 1 CUUGAACAUGAUCCUGUAAAUUGAACAGUGCUACCCAUAGAAAUAAAGGCGCCAAAAUAACAGACACAGUGCUGCCCAGGAUCUGCAAAAUGUUCCUUUAAAUUAAAUUGUAUGGUAAAU ...(((((((((((((...........(((((.....((....))..)))))........(((.(.....))))..)))))))......))))))......................... ( -19.30) >consensus CUUGAACAUGAUCCUGUUAAUUGAACUGUGCUGCCCAUAGAAAUAAUGGCGGGAAAAGACCGGGCACAGUGCUGCCCAGGAUCUGCAAAAUGUUCAUUUAAAAUCAAAUGUAUUUUAAA_ ...(((((((((((((........(((((((((((..((....))..)))((.......)).))))))))......)))))))......))))))......................... (-23.33 = -24.64 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:03 2006