Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,535,694 – 15,535,790 |
Length | 96 |
Max. P | 0.500000 |
Location | 15,535,694 – 15,535,790 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -11.63 |
Consensus MFE | -7.36 |
Energy contribution | -8.22 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.11 |
Mean z-score | -1.51 |
Structure conservation index | 0.63 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15535694 96 + 22224390 CGGGUGAUUUCACCACCCGUCUAACUAA--AAUAUAUCAAAUAAAAUCAACAAUCAUUGCAAUAGCGCAUUAAAAAUAAAUUAAAUUCCUACUACGGC ((((((.......)))))).........--...........................(((......)))............................. ( -11.40) >DroSim_CAF1 12765 96 + 1 CGGGUGAUUUCACCACCCGUCUAACUAA--AAUUUAUCAAAUAAAAUCAACAAUCAUUGCAAAAGCGCAUUAAAAAUUAAUUAAAUUCCUACUACGGC ((((((.......)))))).........--...........................(((......)))............................. ( -11.40) >DroEre_CAF1 13202 96 + 1 CGGGUGAUUUCACCACCCGUCUAACUAA--AAUAUAUAAAAUAAAAUCAACAAUCUUUGCAAUAGCGCAUUAAAAAAUAAUUAAAUCCUUACUACGGC ((((((.......)))))).........--...........................(((......)))............................. ( -11.40) >DroYak_CAF1 11727 96 + 1 CGGGUGAUUUCACCACCCGUCUAACUAA--AAUAUAUCAAAUAAAAUCAACAAUCUUUGCAAUAACGCAUUAAAAAAUAAUCAAAAUCCUACUACGGC ((((((.......)))))).........--...........................(((......)))............................. ( -11.40) >DroAna_CAF1 16523 90 + 1 GGGGC-UUCUCAGC-CCCGUCUAACUAA--AA-AUACAAAAUAAAGUCAACAAUG-UUGCAAUAGCGCAU--AAAAUUAAUUAAAAUUCUACUACGGA (((((-(....)))-)))..........--..-...................(((-(.((....))))))--...................(....). ( -15.00) >DroPer_CAF1 44261 95 + 1 CGGGCACGCCCCUCCGCCGUAUAACUAAUCAAAAUACAAAAUAAAAUCAACAAU-AUUGCAAUAGCGCGU--ACAAAUAAUUAAUAAUCUAAUAUAUU .(((....)))...(((.((((...........)))).................-...((....))))).--.......................... ( -9.20) >consensus CGGGUGAUUUCACCACCCGUCUAACUAA__AAUAUAUAAAAUAAAAUCAACAAUCAUUGCAAUAGCGCAUUAAAAAAUAAUUAAAAUCCUACUACGGC ((((((.......))))))......................................(((......)))............................. ( -7.36 = -8.22 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:01 2006